Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 85374273

GI number: 85374273

Start: 1495187

End: 1495987

Strand: Reverse

Name: yfiO [C]

Synonym: ELI_07230

Alternate gene names: 85374273

Gene position: 1495987-1495187 (Counterclockwise)

Preceding gene: 85374274

Following gene: 85374272

Centisome position: 49.01

GC content: 63.67

Gene sequence:

>801_bases
ATGTTTGCCAAAGCCCGCCTGCCGCGCCTGCGCGCGATTGCCGTTTCCGCCCTCGCCACCGCCACGCTGGCCGCCTGTTC
TACCGGCGGCGGGGGCGAGCGGGACACTGCCTACGTCGCGCGTGACGTCGAGACGCTTTACGCCTCGGCCAAGGACCGGC
TCGATCGCGGCAATGCCAAGCTGGCTGCGGCGCTGTTCGACGAGGTCGAGCGGCAGCATCCCTATTCGCCCTGGGCCCGA
CGCGCGCAGTTGATGAGCGCGTTCAGCTATTACGTCTCGCGCGATTACACCAAGGCTATCCAGAGCGCGCAGCGCTTCCT
GTCGATCCACCCGGGTAACAAGGACGCGCCTTACGCCTATTACCTGATCGCGCTCAGCTATTACGAGCAGATTAGCGACG
TACAGCGTGACCAGAAAGTGACCGAGCAGGCGCTGACCGCGCTGCGCGAAGTCGATCGCCGCTTCCCGCAGACCGAATAT
GCCGCCGACGCCCGGCTCAAGATGGATCTCGTCAACGATCACCTGGCCGGCAAGGAAATGGAAATCGGCCGCTTCTACCA
GCGCACTGCCAAATGGGCGGCGGCGGTGATCCGGTTCCAGAACGTGGTCGACGATTACCAGACCACCAGCCACGCGCCCG
AAGCGCTCTATCGCCTGACCGAATCGAACCTCGCGCTCGGTATTCCGACCGAAGCGAAGAAATATGCCGCCGTTCTGGGC
GCAAATTATCCGGGCAGCGAATGGTACGAGAAAGCCTACGAACTGATCGGCGATCACGCGCCGACGCAACTCGGCGGCTG
A

Upstream 100 bases:

>100_bases
TCCCCGCCTGCGCGCCGGTTCCGATCATTCCCCAGTTTTGGCTGCCGACGGCTCACAACTTCACTTGGCGTTCAGCGGGG
GCAGGGCTATAGCGCCACCC

Downstream 100 bases:

>100_bases
TCGCTCGCGCGCAAGTAAGTCATTGATTGCGCGCAACGCGGTGGAATTGCGCAATTACCAACGGTGACGCGCCGCGCGGC
TTGGTCTAGAGACTGCGGCC

Product: DNA uptake lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MFAKARLPRLRAIAVSALATATLAACSTGGGGERDTAYVARDVETLYASAKDRLDRGNAKLAAALFDEVERQHPYSPWAR
RAQLMSAFSYYVSRDYTKAIQSAQRFLSIHPGNKDAPYAYYLIALSYYEQISDVQRDQKVTEQALTALREVDRRFPQTEY
AADARLKMDLVNDHLAGKEMEIGRFYQRTAKWAAAVIRFQNVVDDYQTTSHAPEALYRLTESNLALGIPTEAKKYAAVLG
ANYPGSEWYEKAYELIGDHAPTQLGG

Sequences:

>Translated_266_residues
MFAKARLPRLRAIAVSALATATLAACSTGGGGERDTAYVARDVETLYASAKDRLDRGNAKLAAALFDEVERQHPYSPWAR
RAQLMSAFSYYVSRDYTKAIQSAQRFLSIHPGNKDAPYAYYLIALSYYEQISDVQRDQKVTEQALTALREVDRRFPQTEY
AADARLKMDLVNDHLAGKEMEIGRFYQRTAKWAAAVIRFQNVVDDYQTTSHAPEALYRLTESNLALGIPTEAKKYAAVLG
ANYPGSEWYEKAYELIGDHAPTQLGG
>Mature_266_residues
MFAKARLPRLRAIAVSALATATLAACSTGGGGERDTAYVARDVETLYASAKDRLDRGNAKLAAALFDEVERQHPYSPWAR
RAQLMSAFSYYVSRDYTKAIQSAQRFLSIHPGNKDAPYAYYLIALSYYEQISDVQRDQKVTEQALTALREVDRRFPQTEY
AADARLKMDLVNDHLAGKEMEIGRFYQRTAKWAAAVIRFQNVVDDYQTTSHAPEALYRLTESNLALGIPTEAKKYAAVLG
ANYPGSEWYEKAYELIGDHAPTQLGG

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=246, Percent_Identity=22.7642276422764, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29753; Mature: 29753

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAKARLPRLRAIAVSALATATLAACSTGGGGERDTAYVARDVETLYASAKDRLDRGNAK
CCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
LAAALFDEVERQHPYSPWARRAQLMSAFSYYVSRDYTKAIQSAQRFLSIHPGNKDAPYAY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHH
YLIALSYYEQISDVQRDQKVTEQALTALREVDRRFPQTEYAADARLKMDLVNDHLAGKEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCCCH
EIGRFYQRTAKWAAAVIRFQNVVDDYQTTSHAPEALYRLTESNLALGIPTEAKKYAAVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHC
ANYPGSEWYEKAYELIGDHAPTQLGG
CCCCCHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFAKARLPRLRAIAVSALATATLAACSTGGGGERDTAYVARDVETLYASAKDRLDRGNAK
CCCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
LAAALFDEVERQHPYSPWARRAQLMSAFSYYVSRDYTKAIQSAQRFLSIHPGNKDAPYAY
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHH
YLIALSYYEQISDVQRDQKVTEQALTALREVDRRFPQTEYAADARLKMDLVNDHLAGKEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCCCH
EIGRFYQRTAKWAAAVIRFQNVVDDYQTTSHAPEALYRLTESNLALGIPTEAKKYAAVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCHHHHHHHHHC
ANYPGSEWYEKAYELIGDHAPTQLGG
CCCCCHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]