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The map label for this gene is sdhC [H]

Identifier: 85374260

GI number: 85374260

Start: 1483408

End: 1483788

Strand: Reverse

Name: sdhC [H]

Synonym: ELI_07165

Alternate gene names: 85374260

Gene position: 1483788-1483408 (Counterclockwise)

Preceding gene: 85374268

Following gene: 85374259

Centisome position: 48.61

GC content: 62.47

Gene sequence:

>381_bases
ATGGCCAACCGCCCACTCTCACCGCACCTGCAAATCTGGAAATGGGGCCCGCATATGCTGGTCTCCATCCTCCACCGTAT
CACCGGCGACGGGATGGCGCTGGTCGGGCTCGGCGTACTGCTGTGGTGGCTCGGCGCGCTGGCGAGCGGGCCGGAGGCCT
ATGAAACCTTCTCGACGCTGGCGACAACCCCGATCGGTTATGTCGTTCTCGTCGGGCTGAGCTGGGCGTTCTTCACCCAC
CTGATGAGCGGGCTTCGCCATTTCGTCCTCGATATCGGTGCGGGCTACGAACTCGATACCAACAAGATGTGGTCGATCGT
CTCGCCGGTACTCGGCGTCCTTCTCACCGTGGCCTTCTGGGCCGTGGTCCTGCTGAAATAA

Upstream 100 bases:

>100_bases
ACGGCCCTTAGCCTATCCTTGCACAGAGCGCTCGTTGCGCTAAGTGGAGGCGCACATCCACCGATGAATTTCGGGACGTT
TTTTCGGGACCAGACGATCT

Downstream 100 bases:

>100_bases
GGGGCACACCATGGGCAACGGAACTTCACTCGGGCGCGTTCGCGGTCTCGGTTCAGCCAAGGAAGGCGCACATCACTGGA
TCGTCCAGCGCTTCACCGCG

Product: hypothetical protein

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MANRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTLATTPIGYVVLVGLSWAFFTH
LMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFWAVVLLK

Sequences:

>Translated_126_residues
MANRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTLATTPIGYVVLVGLSWAFFTH
LMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFWAVVLLK
>Mature_125_residues
ANRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTLATTPIGYVVLVGLSWAFFTHL
MSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFWAVVLLK

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13829; Mature: 13697

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: PS01000 SDH_CYT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTL
CCCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ATTPIGYVVLVGLSWAFFTHLMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFW
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHH
AVVLLK
HHHHCC
>Mature Secondary Structure 
ANRPLSPHLQIWKWGPHMLVSILHRITGDGMALVGLGVLLWWLGALASGPEAYETFSTL
CCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
ATTPIGYVVLVGLSWAFFTHLMSGLRHFVLDIGAGYELDTNKMWSIVSPVLGVLLTVAFW
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHH
AVVLLK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA