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The map label for this gene is ygcA [C]

Identifier: 85374206

GI number: 85374206

Start: 1429647

End: 1430855

Strand: Reverse

Name: ygcA [C]

Synonym: ELI_06895

Alternate gene names: 85374206

Gene position: 1430855-1429647 (Counterclockwise)

Preceding gene: 85374207

Following gene: 85374201

Centisome position: 46.88

GC content: 66.75

Gene sequence:

>1209_bases
GTGACCATAGCCGAACCAATCGTCCGCATCGCCGCGCGCGGTGACGGCGTGACCGAGAGTGGTCGCCACGTCGCGGGCGG
CGTACCGGGTGACTGCGTGCGCGACGACGGCTCGCTCAAACGCGGACCGCATCATGTCGCACCGCCCTGTCGGCATTTCG
CCAAATGCGGCGGCTGCCAGTTGCAGCATGCGGATGAGGAGACGCTGGCACAATTCGTGACCGACCGCGTCGTGCTCGCC
GCCGAAGGGCAGGGGATCGTGCCACAAAATGTCGCGCCTGCGCATCTCTCGCCGCCCGGCGCGCGGCGTCGCGCTACCCT
CCATGCCACGCGGCGGGGCAAGACGATCCTGCTCGGCTATCGCGAAGGCCGCTCGCACACGATCATCGACCTCAAGGAAT
GTCCGGTCTTGCAACCGACGCTCTTTGCATTGGTCGACCCGTTGCGAAAGCTGCTGGCGGGATGGGAAGGGCGCGTTGCC
GTCGATATCGAGCTGACGCAGGTCGATCAGGGCGTGGCATGCGGTATCAAGGGTATCCGGGCCGAGAACCTGCAACAGAC
CGAAGCCCTGCTCGATTTCGCGCGCGAGAATGCGCTTGCGCGGCTGACGGTGGACGACGGACTGGGCCCGGAGACGGTGT
GGGAGCCTGAGCCCTCGACGGTCTCGCTCGGAGGCGTGCCGGTCGTGTTTCCGCCCGGTGCTTTCCTGCAGGCCACGGAG
GACGGCCAGGCGACGCTTGTCGCGGCCGCCAGCGAATGGCTTGCCGGCCATTCGCCGGTTGCCGACCTGTTCGCCGGGCT
CGGCACTTTCGCGTTGTCGCTTGCAGGCCCGGAAAAGGTCTTGGCCGCCGAAGCTTCGCGCGGTGCGCATCTCGCTTGTC
GGCAGGCTGCGCGTCTATCCGGCAAGCCGGTCTTCGCGCAGCATCGCGACCTGTTCCACAATCCTTATTCGGCAGAAGAG
ATCTCGAAGCTGGCCGCCGTCCTGCTGGATCCGCCCCGCGCAGGTGCGCGTGAGCAGGTGGAGCAGATTGCGCAAAGCAG
CGTCGGCCGCGTGGTCTATATCAGCTGCAATCCCGCAAGCTGGGCCAAGGACGCCAAGCGGCTCGTCGATGCAGGGTTCG
AGCTGAAGGAAGTGCGCCCGGTCGGCCAGTTTCGCTGGTCGACGCATGTCGAACTCGCCAGCCTGTTCGTCCGCCCGTCA
GGCGCGTAG

Upstream 100 bases:

>100_bases
CGGGAGTGTATCTGCACCAACAGGCGGCGCGCGAGGCTGCGGGGCCTTTCTCCGCCAGCGATCTGGCGCAAGCGATCCCA
GCCGCCTATCGCGCCTTTCT

Downstream 100 bases:

>100_bases
CGCGGCGAGGATCTGCTTTTCCAGCCAGAACCGCGCGTGGTCTTCGACATAGGCATGCGTCGCGCCTTCGCAGCGCTGCA
CCCTTTCGTCATCCTTCGGC

Product: putative RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MTIAEPIVRIAARGDGVTESGRHVAGGVPGDCVRDDGSLKRGPHHVAPPCRHFAKCGGCQLQHADEETLAQFVTDRVVLA
AEGQGIVPQNVAPAHLSPPGARRRATLHATRRGKTILLGYREGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWEGRVA
VDIELTQVDQGVACGIKGIRAENLQQTEALLDFARENALARLTVDDGLGPETVWEPEPSTVSLGGVPVVFPPGAFLQATE
DGQATLVAAASEWLAGHSPVADLFAGLGTFALSLAGPEKVLAAEASRGAHLACRQAARLSGKPVFAQHRDLFHNPYSAEE
ISKLAAVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPASWAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVRPS
GA

Sequences:

>Translated_402_residues
MTIAEPIVRIAARGDGVTESGRHVAGGVPGDCVRDDGSLKRGPHHVAPPCRHFAKCGGCQLQHADEETLAQFVTDRVVLA
AEGQGIVPQNVAPAHLSPPGARRRATLHATRRGKTILLGYREGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWEGRVA
VDIELTQVDQGVACGIKGIRAENLQQTEALLDFARENALARLTVDDGLGPETVWEPEPSTVSLGGVPVVFPPGAFLQATE
DGQATLVAAASEWLAGHSPVADLFAGLGTFALSLAGPEKVLAAEASRGAHLACRQAARLSGKPVFAQHRDLFHNPYSAEE
ISKLAAVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPASWAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVRPS
GA
>Mature_401_residues
TIAEPIVRIAARGDGVTESGRHVAGGVPGDCVRDDGSLKRGPHHVAPPCRHFAKCGGCQLQHADEETLAQFVTDRVVLAA
EGQGIVPQNVAPAHLSPPGARRRATLHATRRGKTILLGYREGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWEGRVAV
DIELTQVDQGVACGIKGIRAENLQQTEALLDFARENALARLTVDDGLGPETVWEPEPSTVSLGGVPVVFPPGAFLQATED
GQATLVAAASEWLAGHSPVADLFAGLGTFALSLAGPEKVLAAEASRGAHLACRQAARLSGKPVFAQHRDLFHNPYSAEEI
SKLAAVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPASWAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVRPSG
A

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=371, Percent_Identity=32.6145552560647, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 42775; Mature: 42644

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAEPIVRIAARGDGVTESGRHVAGGVPGDCVRDDGSLKRGPHHVAPPCRHFAKCGGCQ
CCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
LQHADEETLAQFVTDRVVLAAEGQGIVPQNVAPAHLSPPGARRRATLHATRRGKTILLGY
CCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
REGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWEGRVAVDIELTQVDQGVACGIKGIR
ECCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHCCCCCC
AENLQQTEALLDFARENALARLTVDDGLGPETVWEPEPSTVSLGGVPVVFPPGAFLQATE
CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECC
DGQATLVAAASEWLAGHSPVADLFAGLGTFALSLAGPEKVLAAEASRGAHLACRQAARLS
CCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHEECCCCHHHHHHHCCCCHHHHHHHHHHCC
GKPVFAQHRDLFHNPYSAEEISKLAAVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPAS
CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHH
WAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVRPSGA
HHHHHHHHHHCCCCHHHCCCCHHCCCHHHHEEHHHEECCCCC
>Mature Secondary Structure 
TIAEPIVRIAARGDGVTESGRHVAGGVPGDCVRDDGSLKRGPHHVAPPCRHFAKCGGCQ
CHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
LQHADEETLAQFVTDRVVLAAEGQGIVPQNVAPAHLSPPGARRRATLHATRRGKTILLGY
CCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEE
REGRSHTIIDLKECPVLQPTLFALVDPLRKLLAGWEGRVAVDIELTQVDQGVACGIKGIR
ECCCCCEEEEHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHCCCCCC
AENLQQTEALLDFARENALARLTVDDGLGPETVWEPEPSTVSLGGVPVVFPPGAFLQATE
CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECC
DGQATLVAAASEWLAGHSPVADLFAGLGTFALSLAGPEKVLAAEASRGAHLACRQAARLS
CCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHEECCCCHHHHHHHCCCCHHHHHHHHHHCC
GKPVFAQHRDLFHNPYSAEEISKLAAVLLDPPRAGAREQVEQIAQSSVGRVVYISCNPAS
CCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCHH
WAKDAKRLVDAGFELKEVRPVGQFRWSTHVELASLFVRPSGA
HHHHHHHHHHCCCCHHHCCCCHHCCCHHHHEEHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA