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The map label for this gene is traB [H]

Identifier: 85373697

GI number: 85373697

Start: 900835

End: 902118

Strand: Reverse

Name: traB [H]

Synonym: ELI_04350

Alternate gene names: 85373697

Gene position: 902118-900835 (Counterclockwise)

Preceding gene: 85373698

Following gene: 85373696

Centisome position: 29.55

GC content: 67.21

Gene sequence:

>1284_bases
ATGGCCGATACCGACAGACACGATACGCCCGCCGCAGCGCCCAAGGACGAGACGCGCGGCGAAGCCCGGCGCAATCTCAA
CCGCACGGTCGCGCAGCGCCAGAAGCTGCTGCTCGCCGGCATCGGCGGGGTGGCACTCATCTCCGGTTCGATGTTCATCT
TCGGCGGCGAGGATGAAGCCGGCGCCGGCGGCGCGGGCGCGACCACGATCGAGACCGGCGCGCTGGTCAATCGCAATCTC
TCGCAGCGCGAATTCGTCGCCACTTATGGCAACCGTCTTGATGCGCAGGGCCGCGCGATCAAGGACCTGCAGGAAAGCCA
GCTTCCCAAGGCCTCGATCGAGCAGGAGCTCGAGACATTGCGCGGCGAAAACGCGCGGATGCTGAGCGACGGTCAGGCGG
CGATCGATGCGATCTCGGCCGAGAACGCCGCCTTGCGCTCGGAACTCGAGACGGTGCGCGCCAATCCCCCAGTTACGCCG
GTTCCCTCAGCCGATCCGCGGGCTCCGGGCTTCCCTCCCGGAGCGCTCGAGCCACCCAGCGAACCCAAGGCAAGCCTGCT
GAGTTTCTCATCCGACAAGCCGGGCGCCGCCAAGACCAAGGCAATCGAAAGCGCGCCGACGCTGCTGCTCGAGGCAAGCC
GCGATTACCTGCCGCCCAACAGCTATGCACCTGCCACCGTGATCGTCGGGGTCGACGCCTCGACGGGCGTTACCAGCCAG
AGCGATCCGCTGCCCGTGGTGCTGCGGATCACCGGTCCGGCGCGCTCGGTGCTGCAGGGCAACAAGCTTCTCACCACCGA
TCTCACCGGCTGCCTCGTCAACGGCGCGGCGCGCGGCGATCTCTCGGCCGAGAAGGTTTACGTCAAGCTTGTGCGCATGA
CCTGTGCGCAACCGGGCGGACGCTTTGCGGTGAGCGAGGTCAAGGGGTTCATCGCCTTTGCCGGCAAGTCGGGCGTTCGC
GGCAATGTCGTCAGCCGCGAAGGCAGCCTCGTCAGCCAGGCGCTGCTCGCCGGGATCGTCGGCGGGTTCGGACGCGGCTT
CTCGGCCAATGCCAACGGCATCTTTGCGCAGCCTGTCGGCAGCGACGGCAGGCGCGACGCGCTCTCGCCGACCGACATTC
TCGCAGGCGGCCTCGGCCAGGGCGCGGGCGAAGCCGCCGACACGGTCAGCAAATACCTCATCGAACGCGCAGAACAGTAC
CAACCCGTCGTCGAGATGCCGACCGGCATCGCAGTCGAGATCGTCTTTCTCGACGGCGTCCATGTCAGGAGCACACCCCA
ATGA

Upstream 100 bases:

>100_bases
CGCCCGCCGGGGCGCTGGCCTTTGCCTATGGCCGCGACAGTCTCCAGCCCGGCGAGAGCACGCAGGCCTTCCTCGTCTTT
GCGAAGGGAGGGCTCGAATA

Downstream 100 bases:

>100_bases
ACTACTCGAACCAGCGGCCCGGCCTCAAGGCGCGCGCCGCGCACATATCGCTCGCCGCCGCCAGCGCAGCAGCCCTCCTT
ACAAGCGGTGTCGCGGTAGT

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MADTDRHDTPAAAPKDETRGEARRNLNRTVAQRQKLLLAGIGGVALISGSMFIFGGEDEAGAGGAGATTIETGALVNRNL
SQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETVRANPPVTP
VPSADPRAPGFPPGALEPPSEPKASLLSFSSDKPGAAKTKAIESAPTLLLEASRDYLPPNSYAPATVIVGVDASTGVTSQ
SDPLPVVLRITGPARSVLQGNKLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIAFAGKSGVR
GNVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAQPVGSDGRRDALSPTDILAGGLGQGAGEAADTVSKYLIERAEQY
QPVVEMPTGIAVEIVFLDGVHVRSTPQ

Sequences:

>Translated_427_residues
MADTDRHDTPAAAPKDETRGEARRNLNRTVAQRQKLLLAGIGGVALISGSMFIFGGEDEAGAGGAGATTIETGALVNRNL
SQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETVRANPPVTP
VPSADPRAPGFPPGALEPPSEPKASLLSFSSDKPGAAKTKAIESAPTLLLEASRDYLPPNSYAPATVIVGVDASTGVTSQ
SDPLPVVLRITGPARSVLQGNKLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIAFAGKSGVR
GNVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAQPVGSDGRRDALSPTDILAGGLGQGAGEAADTVSKYLIERAEQY
QPVVEMPTGIAVEIVFLDGVHVRSTPQ
>Mature_426_residues
ADTDRHDTPAAAPKDETRGEARRNLNRTVAQRQKLLLAGIGGVALISGSMFIFGGEDEAGAGGAGATTIETGALVNRNLS
QREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETVRANPPVTPV
PSADPRAPGFPPGALEPPSEPKASLLSFSSDKPGAAKTKAIESAPTLLLEASRDYLPPNSYAPATVIVGVDASTGVTSQS
DPLPVVLRITGPARSVLQGNKLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIAFAGKSGVRG
NVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAQPVGSDGRRDALSPTDILAGGLGQGAGEAADTVSKYLIERAEQYQ
PVVEMPTGIAVEIVFLDGVHVRSTPQ

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44162; Mature: 44031

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTDRHDTPAAAPKDETRGEARRNLNRTVAQRQKLLLAGIGGVALISGSMFIFGGEDEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCEEEECCCCCC
GAGGAGATTIETGALVNRNLSQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETL
CCCCCCCCEEECCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
RGENARMLSDGQAAIDAISAENAALRSELETVRANPPVTPVPSADPRAPGFPPGALEPPS
CCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
EPKASLLSFSSDKPGAAKTKAIESAPTLLLEASRDYLPPNSYAPATVIVGVDASTGVTSQ
CCHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC
SDPLPVVLRITGPARSVLQGNKLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGG
CCCCEEEEEECCCHHHHHCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
RFAVSEVKGFIAFAGKSGVRGNVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAQPVG
CEEHHHHCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
SDGRRDALSPTDILAGGLGQGAGEAADTVSKYLIERAEQYQPVVEMPTGIAVEIVFLDGV
CCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEECCE
HVRSTPQ
EECCCCC
>Mature Secondary Structure 
ADTDRHDTPAAAPKDETRGEARRNLNRTVAQRQKLLLAGIGGVALISGSMFIFGGEDEA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCEEEECCCCCC
GAGGAGATTIETGALVNRNLSQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETL
CCCCCCCCEEECCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
RGENARMLSDGQAAIDAISAENAALRSELETVRANPPVTPVPSADPRAPGFPPGALEPPS
CCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
EPKASLLSFSSDKPGAAKTKAIESAPTLLLEASRDYLPPNSYAPATVIVGVDASTGVTSQ
CCHHHHHCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC
SDPLPVVLRITGPARSVLQGNKLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGG
CCCCEEEEEECCCHHHHHCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC
RFAVSEVKGFIAFAGKSGVRGNVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAQPVG
CEEHHHHCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCC
SDGRRDALSPTDILAGGLGQGAGEAADTVSKYLIERAEQYQPVVEMPTGIAVEIVFLDGV
CCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEECCE
HVRSTPQ
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]