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The map label for this gene is ydcR [C]

Identifier: 85373650

GI number: 85373650

Start: 849614

End: 850078

Strand: Direct

Name: ydcR [C]

Synonym: ELI_04115

Alternate gene names: 85373650

Gene position: 849614-850078 (Clockwise)

Preceding gene: 85373649

Following gene: 85373651

Centisome position: 27.83

GC content: 57.63

Gene sequence:

>465_bases
ATGACAAACTGGGTTCCTGATCTGAGCGGAAAAGCTGGCCCCAAGTATCTTGCGCTCGCGGAATCACTGACGAATTCTAT
CGGGACTGGCGAGCTGAAGCCTGGCGCGCGATTGCCTCCACAGCGCGAACTGGCGCAAACTCTAGGCTTTGATCTGACCA
CCGTTACCCGTGCCTATAACATCGCTCGTCAGCGTGGGTTGATCGATGGTCGGGGGAAAGCCGGGAGCTTCGTGCGGGAG
ACGGCCACGCATTCGATCTACGCAGCCGCGCAAGTGGATACCGGATTGAATACGCCGCCTGTCCCATCGGACGGGATTCT
CCAGAAAGAGATGAAAAGAGCTTTCGATTTGGCTCTTGGCCAGAACGCGGGCTCATTGCTCCAATATCAATCCGCTGGCA
ATGATCAGGCAATCATCCGGGCTGGAACCGACCTTGCGGCGCGGGTCGGGCTATGGATCAGGTAG

Upstream 100 bases:

>100_bases
AAGGGGTGGCTTGTGGCCTCGCAGTTCGTCAACAAGGCTGTCGAAGCCGGCACAGAGAAACTGTGGGCGGAAATGCACGA
GCGGGAGGATGATTCCAGAA

Downstream 100 bases:

>100_bases
TCACGGCGGCTGGCGGCCAGAATGCGCTGCTCGCCGTATCGCGGGCGGTACTTGCTCCTGGTGCCAGGGTCGCCTGCGGA
GAGTTCGTCTACCCCGGCTT

Product: regulatory protein GntR, HTH:aminotransferase, class I and II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MTNWVPDLSGKAGPKYLALAESLTNSIGTGELKPGARLPPQRELAQTLGFDLTTVTRAYNIARQRGLIDGRGKAGSFVRE
TATHSIYAAAQVDTGLNTPPVPSDGILQKEMKRAFDLALGQNAGSLLQYQSAGNDQAIIRAGTDLAARVGLWIR

Sequences:

>Translated_154_residues
MTNWVPDLSGKAGPKYLALAESLTNSIGTGELKPGARLPPQRELAQTLGFDLTTVTRAYNIARQRGLIDGRGKAGSFVRE
TATHSIYAAAQVDTGLNTPPVPSDGILQKEMKRAFDLALGQNAGSLLQYQSAGNDQAIIRAGTDLAARVGLWIR
>Mature_153_residues
TNWVPDLSGKAGPKYLALAESLTNSIGTGELKPGARLPPQRELAQTLGFDLTTVTRAYNIARQRGLIDGRGKAGSFVRET
ATHSIYAAAQVDTGLNTPPVPSDGILQKEMKRAFDLALGQNAGSLLQYQSAGNDQAIIRAGTDLAARVGLWIR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 16391; Mature: 16260

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNWVPDLSGKAGPKYLALAESLTNSIGTGELKPGARLPPQRELAQTLGFDLTTVTRAYN
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
IARQRGLIDGRGKAGSFVRETATHSIYAAAQVDTGLNTPPVPSDGILQKEMKRAFDLALG
HHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
QNAGSLLQYQSAGNDQAIIRAGTDLAARVGLWIR
CCCCCCEEECCCCCCCEEEEECCHHHHHCCCCCC
>Mature Secondary Structure 
TNWVPDLSGKAGPKYLALAESLTNSIGTGELKPGARLPPQRELAQTLGFDLTTVTRAYN
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
IARQRGLIDGRGKAGSFVRETATHSIYAAAQVDTGLNTPPVPSDGILQKEMKRAFDLALG
HHHHCCCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHC
QNAGSLLQYQSAGNDQAIIRAGTDLAARVGLWIR
CCCCCCEEECCCCCCCEEEEECCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]