Click here to switch to the map view.

The map label for this gene is yjbJ [H]

Identifier: 85373629

GI number: 85373629

Start: 827114

End: 827710

Strand: Reverse

Name: yjbJ [H]

Synonym: ELI_04010

Alternate gene names: 85373629

Gene position: 827710-827114 (Counterclockwise)

Preceding gene: 85373635

Following gene: 85373623

Centisome position: 27.12

GC content: 57.62

Gene sequence:

>597_bases
ATGTATCTGGTGGCCTGCGGTTGCGGTGCGCTAGCGATTGCGATAGCGATAGCGATTTCGGGGTCTGCGCGGGCGCGGGA
GTTTCAAGTCTTCGACCATGACCTCAGCAAAGTTGAGGTTACAACCGACAAAGGTCTTGGCTTTAACCCGACTGCAATCG
ACTTGGCCAAACCAGAAGGCGGCAAGGCTTATATCGATAGAAGCTTCAAGGAAGCTTTGTACGAGCCACTCATCCGGCAA
GCTGAAGCGCGATACCAATTACCGCCTCGACTGCTTCAGGCCCTGATTTGGCAGGAATCGCGGTTCAACCCGATGGCGAT
CAGTCCGGCTGGCGCCGCTGGTCTCGCTCAACTGATGCCGGGAACGGCAAGAGAACTCGGTGTCAGCAATCGCCACGATC
CGGCTCAGAACATCGACGGTGGCGCGCGGTATCTGAAGCAGATGCTAGAGCGCTTTGGTGCGATCCATCTCGCGCTGGCC
GCCTACAACGCTGGACCCGGCGCCGTGTCGCGAGCCGGCGGGATACCGAAAAATCGGGAAACGCCTGGATATGTGAAGAG
CGTTATCGACCGATGGATGGCATACAGCTCGATATGA

Upstream 100 bases:

>100_bases
TCCTCTCGGATAAGCACGCAAAAAAGCGTTTTCCTACACCTATTTGTTCTATTTATGTTCTCTTGCAGATCGAGGCAAGG
TGAAAGGTTATGCGATGCGA

Downstream 100 bases:

>100_bases
CTACGAATCGGAAAAGGATCAGCGGACGGCTCGAGCATCTTCCTCGGGGAGCTGCAATTGTAACCGATGCCGGTGATCAC
TGGGTTCTTGAAGACTATGA

Product: lytic transglycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MYLVACGCGALAIAIAIAISGSARAREFQVFDHDLSKVEVTTDKGLGFNPTAIDLAKPEGGKAYIDRSFKEALYEPLIRQ
AEARYQLPPRLLQALIWQESRFNPMAISPAGAAGLAQLMPGTARELGVSNRHDPAQNIDGGARYLKQMLERFGAIHLALA
AYNAGPGAVSRAGGIPKNRETPGYVKSVIDRWMAYSSI

Sequences:

>Translated_198_residues
MYLVACGCGALAIAIAIAISGSARAREFQVFDHDLSKVEVTTDKGLGFNPTAIDLAKPEGGKAYIDRSFKEALYEPLIRQ
AEARYQLPPRLLQALIWQESRFNPMAISPAGAAGLAQLMPGTARELGVSNRHDPAQNIDGGARYLKQMLERFGAIHLALA
AYNAGPGAVSRAGGIPKNRETPGYVKSVIDRWMAYSSI
>Mature_198_residues
MYLVACGCGALAIAIAIAISGSARAREFQVFDHDLSKVEVTTDKGLGFNPTAIDLAKPEGGKAYIDRSFKEALYEPLIRQ
AEARYQLPPRLLQALIWQESRFNPMAISPAGAAGLAQLMPGTARELGVSNRHDPAQNIDGGARYLKQMLERFGAIHLALA
AYNAGPGAVSRAGGIPKNRETPGYVKSVIDRWMAYSSI

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

Organism=Escherichia coli, GI171474010, Length=83, Percent_Identity=42.1686746987952, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87082441, Length=208, Percent_Identity=31.7307692307692, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 21317; Mature: 21317

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLVACGCGALAIAIAIAISGSARAREFQVFDHDLSKVEVTTDKGLGFNPTAIDLAKPEG
CEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCC
GKAYIDRSFKEALYEPLIRQAEARYQLPPRLLQALIWQESRFNPMAISPAGAAGLAQLMP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCC
GTARELGVSNRHDPAQNIDGGARYLKQMLERFGAIHLALAAYNAGPGAVSRAGGIPKNRE
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHCCCCCCCCC
TPGYVKSVIDRWMAYSSI
CCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYLVACGCGALAIAIAIAISGSARAREFQVFDHDLSKVEVTTDKGLGFNPTAIDLAKPEG
CEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCC
GKAYIDRSFKEALYEPLIRQAEARYQLPPRLLQALIWQESRFNPMAISPAGAAGLAQLMP
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCC
GTARELGVSNRHDPAQNIDGGARYLKQMLERFGAIHLALAAYNAGPGAVSRAGGIPKNRE
CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHCCCCCCCCC
TPGYVKSVIDRWMAYSSI
CCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]