| Definition | Erythrobacter litoralis HTCC2594 chromosome, complete genome. |
|---|---|
| Accession | NC_007722 |
| Length | 3,052,398 |
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The map label for this gene is rafA [H]
Identifier: 85373530
GI number: 85373530
Start: 725324
End: 727441
Strand: Reverse
Name: rafA [H]
Synonym: ELI_03515
Alternate gene names: 85373530
Gene position: 727441-725324 (Counterclockwise)
Preceding gene: 85373536
Following gene: 85373529
Centisome position: 23.83
GC content: 64.16
Gene sequence:
>2118_bases ATGTGCAAGGGCCATATGACCGTCGAAATCACCAGTGAGTTCGTGACCTTGCGCGCAGGCGGCACGCTGATCGTTCTGGC GGCGTCGAAGGGCGGGCGCGCAAGAATGGTTTACGCCGGGCCGGACCTGCAAAGCGCGTCGCCCGAAGATCTGGTCGCGC TGGCCGCGAGGCAGCATGCACCGGGAGGCCCCGAACAGCCGATCGCGCCCTCGCTGCTCAATTGCATCGGAACCGGCCAT CCTTCGCCGCCCGGGCTCCTCGCACATTCCCGAAGCCAACACTGGGCGCTCGATCCGCGTGTCGCAGGGGTGAAAGTAAG TGCGCCGGGACAGGTCACGATCCTGACCCGCGACGAGCCGTCGGGCCTGATGGTGGGGCACTCGATCGCGCTGTGCGAGG CAAGCGGTGTCGCCAACTTCGCAACCGCGCTGTCGACCAATACCGACACCGACTTCGCGCTCGAATGGTGCAGCGCGCTG TGCCTGCCGCTCGACCCGCGCTTCTCGCGCCTCACCAGCTTCACCGGCAAGTGGGCGAGGGAATTCCAGACCGAAGAGCT TGCGCCGATCCGCGGTTCCTTCCTGCGCGAGAATCGCGCCGGGCGGACCAGTCATGACAGCTATCCCGGCTTCTACTGCG GCACCGATACGACCGGTGAGGGGCATGGCGTTGCCGCCGCCTTTCATCTGGCGTGGAATGGCAACCATCGCCTGCGGCTC GACCGGCTGGCGGACGAGACGTTCTCGCTTCAGGCTGGCGAATTGCTGCTGCCGGGCGAGATCACCATCACCAAGGGCAT GAGCTATGTCACGCCGACGTTGCTTGCGAGCTTTTCCGATGAGGGATACGGCGCGGCGACCCGCGGTCTGCATCGCTGGC TGCGCGCCAATCGCCTAAAGCCCGACCTTCCCCGACCGGTGCATTACAATACGTGGGAAGCGGTCTATTTCGACCAAACG CCCGGGAGGCTGTTTGCGCTGGCCAAGCAGGCGGCCGAGGTCGGTGCCGAACGCTTCGTGCTCGACGATGGCTGGTTCGG CGCGCGGCGCAACGACCGCGCAGGGCTCGGCGACTGGCACGTGTCGGACGCGATCTATCCCGATGGGCTTAAACCGCTCG CCGATCATGTCCGCAGCCTCGGCATGGAATTCGGCCTGTGGTTCGAGCCCGAGATGGTCAATCCCGACAGCGATCTCTAC CGCGCCCATCCCGATTGGGTGCTCGAGATGGATGAGGTCGAACCGATCGCCTCGCGCCACCAATTACCGGTCGACATGAC CCTGCCCGTGGTGCGCGATTACCTGTTCGAGCGTATCGACAGTCTCGTGAGCGACCTCGGTATCGCCTACATCAAGTGGG ACATGAACCGCGACATCCAGCATCCGGGCGGCGCGGACGGCAGGCCTGCGGCGCATCGCAATGCCAAGGCGATCCAGCTG CTGCTCGACCGGCTGCGCGAGGCGCATCCCGATCTGGTGATCGAAAGCTGTTCCAGCGGGGGCGCGCGCGCCGACTATGC CATGCTCGAACGAACCGACCGCGTCTGGACCAGCGACAACAACGATGCCCGCGCGCGCCACGCGATCATGCGCGGGGCCG GCTATTTCCTGCCGCTCGAAGTGCTCGGCAACCATGTCGGTCCGAAGACCTGTCACATCACCGGGCGGCGCTTTCCAATG CATTTCCGCGCCGGGACCGCCGTGTTCGGTCACATGGGAATGGAACTGGACCTTGCGAAAGAGAACGACGCCGACCGCGC GGTGCTGGCGAAGGCGATCGACCTCTACAAGGCCCATCGCGCGCTGATCCATTCGGGCGATTATTACCGGTTGGAAACTG CCAGCCATATCAATGCGATCGGCGTCGTTTCTGCCAATCGCGATGAGGCGCTTTATCAGGTTGCGATACTCGACCAGCAC CCTGCCCCGCATCCGCCCAGATTGCATTTTGCGGGCCTGGGTAGAGACCGACGCTATCGTCTCGCTATCGAATGGCCGGA ACACCATGCGGCCGAGATATCGACCTTTACGGGATCGGCGCTGATGGACTACGGGCTGCAACTTCCGCAGTCGCTGCCAG ACACCTGCCTGATCTATCACCTGAAAGAAGAGCGTTGA
Upstream 100 bases:
>100_bases AACACCGTGACCTGGATCAGATTGTCCATGCGCCCCATTCTCCCCTCGACGCCGCGATAGCCGGAGCGGTGCAAATCCGA TAGGGCCTTGGCCTCGATTG
Downstream 100 bases:
>100_bases GCAACCCATACGACTTGTTGATCATCGGCGGTGGTATCAACGGAGCCGGAATTGCCCGGGACGCGGCCGGTCGGGGAGCA AAGGTTCTGCTGGTTGAGAA
Product: alpha-galactosidase
Products: NA
Alternate protein names: Melibiase [H]
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MCKGHMTVEITSEFVTLRAGGTLIVLAASKGGRARMVYAGPDLQSASPEDLVALAARQHAPGGPEQPIAPSLLNCIGTGH PSPPGLLAHSRSQHWALDPRVAGVKVSAPGQVTILTRDEPSGLMVGHSIALCEASGVANFATALSTNTDTDFALEWCSAL CLPLDPRFSRLTSFTGKWAREFQTEELAPIRGSFLRENRAGRTSHDSYPGFYCGTDTTGEGHGVAAAFHLAWNGNHRLRL DRLADETFSLQAGELLLPGEITITKGMSYVTPTLLASFSDEGYGAATRGLHRWLRANRLKPDLPRPVHYNTWEAVYFDQT PGRLFALAKQAAEVGAERFVLDDGWFGARRNDRAGLGDWHVSDAIYPDGLKPLADHVRSLGMEFGLWFEPEMVNPDSDLY RAHPDWVLEMDEVEPIASRHQLPVDMTLPVVRDYLFERIDSLVSDLGIAYIKWDMNRDIQHPGGADGRPAAHRNAKAIQL LLDRLREAHPDLVIESCSSGGARADYAMLERTDRVWTSDNNDARARHAIMRGAGYFLPLEVLGNHVGPKTCHITGRRFPM HFRAGTAVFGHMGMELDLAKENDADRAVLAKAIDLYKAHRALIHSGDYYRLETASHINAIGVVSANRDEALYQVAILDQH PAPHPPRLHFAGLGRDRRYRLAIEWPEHHAAEISTFTGSALMDYGLQLPQSLPDTCLIYHLKEER
Sequences:
>Translated_705_residues MCKGHMTVEITSEFVTLRAGGTLIVLAASKGGRARMVYAGPDLQSASPEDLVALAARQHAPGGPEQPIAPSLLNCIGTGH PSPPGLLAHSRSQHWALDPRVAGVKVSAPGQVTILTRDEPSGLMVGHSIALCEASGVANFATALSTNTDTDFALEWCSAL CLPLDPRFSRLTSFTGKWAREFQTEELAPIRGSFLRENRAGRTSHDSYPGFYCGTDTTGEGHGVAAAFHLAWNGNHRLRL DRLADETFSLQAGELLLPGEITITKGMSYVTPTLLASFSDEGYGAATRGLHRWLRANRLKPDLPRPVHYNTWEAVYFDQT PGRLFALAKQAAEVGAERFVLDDGWFGARRNDRAGLGDWHVSDAIYPDGLKPLADHVRSLGMEFGLWFEPEMVNPDSDLY RAHPDWVLEMDEVEPIASRHQLPVDMTLPVVRDYLFERIDSLVSDLGIAYIKWDMNRDIQHPGGADGRPAAHRNAKAIQL LLDRLREAHPDLVIESCSSGGARADYAMLERTDRVWTSDNNDARARHAIMRGAGYFLPLEVLGNHVGPKTCHITGRRFPM HFRAGTAVFGHMGMELDLAKENDADRAVLAKAIDLYKAHRALIHSGDYYRLETASHINAIGVVSANRDEALYQVAILDQH PAPHPPRLHFAGLGRDRRYRLAIEWPEHHAAEISTFTGSALMDYGLQLPQSLPDTCLIYHLKEER >Mature_705_residues MCKGHMTVEITSEFVTLRAGGTLIVLAASKGGRARMVYAGPDLQSASPEDLVALAARQHAPGGPEQPIAPSLLNCIGTGH PSPPGLLAHSRSQHWALDPRVAGVKVSAPGQVTILTRDEPSGLMVGHSIALCEASGVANFATALSTNTDTDFALEWCSAL CLPLDPRFSRLTSFTGKWAREFQTEELAPIRGSFLRENRAGRTSHDSYPGFYCGTDTTGEGHGVAAAFHLAWNGNHRLRL DRLADETFSLQAGELLLPGEITITKGMSYVTPTLLASFSDEGYGAATRGLHRWLRANRLKPDLPRPVHYNTWEAVYFDQT PGRLFALAKQAAEVGAERFVLDDGWFGARRNDRAGLGDWHVSDAIYPDGLKPLADHVRSLGMEFGLWFEPEMVNPDSDLY RAHPDWVLEMDEVEPIASRHQLPVDMTLPVVRDYLFERIDSLVSDLGIAYIKWDMNRDIQHPGGADGRPAAHRNAKAIQL LLDRLREAHPDLVIESCSSGGARADYAMLERTDRVWTSDNNDARARHAIMRGAGYFLPLEVLGNHVGPKTCHITGRRFPM HFRAGTAVFGHMGMELDLAKENDADRAVLAKAIDLYKAHRALIHSGDYYRLETASHINAIGVVSANRDEALYQVAILDQH PAPHPPRLHFAGLGRDRRYRLAIEWPEHHAAEISTFTGSALMDYGLQLPQSLPDTCLIYHLKEER
Specific function: Unknown
COG id: COG3345
COG function: function code G; Alpha-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 36 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR002252 - InterPro: IPR017853 - InterPro: IPR000111 [H]
Pfam domain/function: PF02065 Melibiase [H]
EC number: =3.2.1.22 [H]
Molecular weight: Translated: 77752; Mature: 77752
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCKGHMTVEITSEFVTLRAGGTLIVLAASKGGRARMVYAGPDLQSASPEDLVALAARQHA CCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCC PGGPEQPIAPSLLNCIGTGHPSPPGLLAHSRSQHWALDPRVAGVKVSAPGQVTILTRDEP CCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCEECCCCCCEEEECCCCEEEEEECCCC SGLMVGHSIALCEASGVANFATALSTNTDTDFALEWCSALCLPLDPRFSRLTSFTGKWAR CCEEEECEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH EFQTEELAPIRGSFLRENRAGRTSHDSYPGFYCGTDTTGEGHGVAAAFHLAWNGNHRLRL HHCCHHCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEECCCCEEEE DRLADETFSLQAGELLLPGEITITKGMSYVTPTLLASFSDEGYGAATRGLHRWLRANRLK HHHCCCHHCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC PDLPRPVHYNTWEAVYFDQTPGRLFALAKQAAEVGAERFVLDDGWFGARRNDRAGLGDWH CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEE VSDAIYPDGLKPLADHVRSLGMEFGLWFEPEMVNPDSDLYRAHPDWVLEMDEVEPIASRH CCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHHEECCCCEEEEECCCCHHHHHC QLPVDMTLPVVRDYLFERIDSLVSDLGIAYIKWDMNRDIQHPGGADGRPAAHRNAKAIQL CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH LLDRLREAHPDLVIESCSSGGARADYAMLERTDRVWTSDNNDARARHAIMRGAGYFLPLE HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEHH VLGNHVGPKTCHITGRRFPMHFRAGTAVFGHMGMELDLAKENDADRAVLAKAIDLYKAHR HHCCCCCCCEEEEECCCCCEEEECCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHH ALIHSGDYYRLETASHINAIGVVSANRDEALYQVAILDQHPAPHPPRLHFAGLGRDRRYR HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEE LAIEWPEHHAAEISTFTGSALMDYGLQLPQSLPDTCLIYHLKEER EEEECCCCCCHHEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCC >Mature Secondary Structure MCKGHMTVEITSEFVTLRAGGTLIVLAASKGGRARMVYAGPDLQSASPEDLVALAARQHA CCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCC PGGPEQPIAPSLLNCIGTGHPSPPGLLAHSRSQHWALDPRVAGVKVSAPGQVTILTRDEP CCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCEECCCCCCEEEECCCCEEEEEECCCC SGLMVGHSIALCEASGVANFATALSTNTDTDFALEWCSALCLPLDPRFSRLTSFTGKWAR CCEEEECEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH EFQTEELAPIRGSFLRENRAGRTSHDSYPGFYCGTDTTGEGHGVAAAFHLAWNGNHRLRL HHCCHHCCCHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEEECCCCEEEE DRLADETFSLQAGELLLPGEITITKGMSYVTPTLLASFSDEGYGAATRGLHRWLRANRLK HHHCCCHHCCCCCCEEECCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC PDLPRPVHYNTWEAVYFDQTPGRLFALAKQAAEVGAERFVLDDGWFGARRNDRAGLGDWH CCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEE VSDAIYPDGLKPLADHVRSLGMEFGLWFEPEMVNPDSDLYRAHPDWVLEMDEVEPIASRH CCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCHHEECCCCEEEEECCCCHHHHHC QLPVDMTLPVVRDYLFERIDSLVSDLGIAYIKWDMNRDIQHPGGADGRPAAHRNAKAIQL CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH LLDRLREAHPDLVIESCSSGGARADYAMLERTDRVWTSDNNDARARHAIMRGAGYFLPLE HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEHH VLGNHVGPKTCHITGRRFPMHFRAGTAVFGHMGMELDLAKENDADRAVLAKAIDLYKAHR HHCCCCCCCEEEEECCCCCEEEECCCEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHH ALIHSGDYYRLETASHINAIGVVSANRDEALYQVAILDQHPAPHPPRLHFAGLGRDRRYR HHHCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCEEE LAIEWPEHHAAEISTFTGSALMDYGLQLPQSLPDTCLIYHLKEER EEEECCCCCCHHEECCCCHHHHHHHHHCCCCCCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2556373; 2180920; 786627 [H]