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The map label for this gene is ydiU [C]

Identifier: 85373402

GI number: 85373402

Start: 605758

End: 607161

Strand: Reverse

Name: ydiU [C]

Synonym: ELI_02875

Alternate gene names: 85373402

Gene position: 607161-605758 (Counterclockwise)

Preceding gene: 85373408

Following gene: 85373401

Centisome position: 19.89

GC content: 66.45

Gene sequence:

>1404_bases
ATGCGCTCCGAACCGCAAGCGTCCGCCTATCGCCCAGAGCGCGCCATCGAGTCGATTGCCGTTTGGCTCGCCTCCCCCGT
CGCCGCGGCCGATTTCCCGCGAGCCACGCTGCGCTTTCGCAACGATCGCTGGGCGCAGACAGTGGGGCTTGCCAGCTTGT
CCGACGACGAGTGGGTGCAGCACTTCGCGCGCTTCGAACCGCTTCCCGACAATCTGCCCGAGCCGCTGGCGCTCAAATAT
CATGGCCACCAGTTCCGCGTTTACAATCCCGAGATCGGCGACGGGCGCGGCTTCCTGTTCGCACAATTGCGCGATGGCGA
GGGCCGGTTGCTCGACCTAGGCACCAAGGGTTCCGGCGTTACGCCCTACAGCCGCACGGCGGATGGGCGGCTCACACTCA
AGGGCGCGGTGCGCGAAATCCTTGCCACCGAGATGCTCGAAGCCTTGGGCGCAAACACCTCTAAGACCTTCTCCGTGGTC
GAAACCGGCGAGGAGCTGGAGCGGGGCGACGAGCCCTCGCCTGCGCGCTCGGCGGTGATGGTCCGGCTCAGCCATTCGCA
TATCCGGATCGGCAGTTTCCAGCGCCTGCTGGTGGAGGAGGAGCCTACGCACATGGCGGCGCTGGTCGACTATTGCCTCC
AGCATTTCCCCGGCCCGCCCCCGCCCGTCGATGCGCCTGGCCGCGACGAACCCGCAGTCCGGCTCATGCATCAGGTCGTC
GAGCGTATGGCCGACCTCGCGGCGAGCTACATGGTCGCAGGCTTCGTCCATGGTGTCCTCAATACCGACAATATGAACAT
AACCGGCGAGAGCTTCGACTACGGGCCGTGGCGCTGGCTCCCGGCCTGGGACCCGGGCTTTACCGCCGCCTATTTCGATC
ATGCCGGACTCTACGCCTTCGGCCGCCAGCCCGAGGCGTTGCATTGGAATTGCGGCCAGTTCGCCGTTGCCCTGCGGGCG
CTGGTCGAGGCGGAGCCGCTGCTGGCAGCGATCAACCGCTTCGGCGAGCTTTACATGGCCGCGATCGGGCGGCGCTGGTG
TTGGCGTCTCGGCTTGCAGTCTCGGGGGCCGGACGCAGATGCCGCGCTCGTGGCAGCATGCGAGAAAGCCCTGCGCGAAG
AGCAGTGTGAGCCCAGCGCTTTCTTCCATCGCCATCGCGGCGGACGCGAAGCCGAGGGCGAGCTGGGCGAGGCGATGGCC
GGTTACACACCGGTAGAGGGCGCGCTCGACCACGACTATTGGCGTGAAAATGCGCCTGAGAGCATGCTGATAGACGAGGT
CGAAACACTCTGGTCCGCCATCGAACAGCGCGACGACTGGGCACCGCTTTACGACAAGATCGCGCGGCTGCGACGGATGG
GCGCAGCGCACGGCGAACCACCGGTGCCGGCGGGCCATACCTGA

Upstream 100 bases:

>100_bases
CATCGGGCGGGAGCGGCTTTCGAGAAGATTTGCAGGTCTAGCGTCGTTTGCTTTGCCCGCCACGCTTGCGCCGGGCCGTG
TCTGCCCTCACTATCGCGCC

Downstream 100 bases:

>100_bases
TCGCGACCGGGCGCGCGGCTTCGATTGACCATTCGGCGGAACCCATTAGAAGCCCTGCCGTAAGTGGACAGAGAGGTTGT
GTGCGCCGGTCGCACACGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MRSEPQASAYRPERAIESIAVWLASPVAAADFPRATLRFRNDRWAQTVGLASLSDDEWVQHFARFEPLPDNLPEPLALKY
HGHQFRVYNPEIGDGRGFLFAQLRDGEGRLLDLGTKGSGVTPYSRTADGRLTLKGAVREILATEMLEALGANTSKTFSVV
ETGEELERGDEPSPARSAVMVRLSHSHIRIGSFQRLLVEEEPTHMAALVDYCLQHFPGPPPPVDAPGRDEPAVRLMHQVV
ERMADLAASYMVAGFVHGVLNTDNMNITGESFDYGPWRWLPAWDPGFTAAYFDHAGLYAFGRQPEALHWNCGQFAVALRA
LVEAEPLLAAINRFGELYMAAIGRRWCWRLGLQSRGPDADAALVAACEKALREEQCEPSAFFHRHRGGREAEGELGEAMA
GYTPVEGALDHDYWRENAPESMLIDEVETLWSAIEQRDDWAPLYDKIARLRRMGAAHGEPPVPAGHT

Sequences:

>Translated_467_residues
MRSEPQASAYRPERAIESIAVWLASPVAAADFPRATLRFRNDRWAQTVGLASLSDDEWVQHFARFEPLPDNLPEPLALKY
HGHQFRVYNPEIGDGRGFLFAQLRDGEGRLLDLGTKGSGVTPYSRTADGRLTLKGAVREILATEMLEALGANTSKTFSVV
ETGEELERGDEPSPARSAVMVRLSHSHIRIGSFQRLLVEEEPTHMAALVDYCLQHFPGPPPPVDAPGRDEPAVRLMHQVV
ERMADLAASYMVAGFVHGVLNTDNMNITGESFDYGPWRWLPAWDPGFTAAYFDHAGLYAFGRQPEALHWNCGQFAVALRA
LVEAEPLLAAINRFGELYMAAIGRRWCWRLGLQSRGPDADAALVAACEKALREEQCEPSAFFHRHRGGREAEGELGEAMA
GYTPVEGALDHDYWRENAPESMLIDEVETLWSAIEQRDDWAPLYDKIARLRRMGAAHGEPPVPAGHT
>Mature_467_residues
MRSEPQASAYRPERAIESIAVWLASPVAAADFPRATLRFRNDRWAQTVGLASLSDDEWVQHFARFEPLPDNLPEPLALKY
HGHQFRVYNPEIGDGRGFLFAQLRDGEGRLLDLGTKGSGVTPYSRTADGRLTLKGAVREILATEMLEALGANTSKTFSVV
ETGEELERGDEPSPARSAVMVRLSHSHIRIGSFQRLLVEEEPTHMAALVDYCLQHFPGPPPPVDAPGRDEPAVRLMHQVV
ERMADLAASYMVAGFVHGVLNTDNMNITGESFDYGPWRWLPAWDPGFTAAYFDHAGLYAFGRQPEALHWNCGQFAVALRA
LVEAEPLLAAINRFGELYMAAIGRRWCWRLGLQSRGPDADAALVAACEKALREEQCEPSAFFHRHRGGREAEGELGEAMA
GYTPVEGALDHDYWRENAPESMLIDEVETLWSAIEQRDDWAPLYDKIARLRRMGAAHGEPPVPAGHT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=312, Percent_Identity=32.0512820512821, Blast_Score=147, Evalue=1e-35,
Organism=Escherichia coli, GI1787999, Length=308, Percent_Identity=33.7662337662338, Blast_Score=182, Evalue=5e-47,
Organism=Saccharomyces cerevisiae, GI6325034, Length=288, Percent_Identity=29.8611111111111, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 51905; Mature: 51905

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEPQASAYRPERAIESIAVWLASPVAAADFPRATLRFRNDRWAQTVGLASLSDDEWVQ
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHEECCCHHHHHHCCCCCCHHHHHH
HFARFEPLPDNLPEPLALKYHGHQFRVYNPEIGDGRGFLFAQLRDGEGRLLDLGTKGSGV
HHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCC
TPYSRTADGRLTLKGAVREILATEMLEALGANTSKTFSVVETGEELERGDEPSPARSAVM
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCHHHHCCCCCCCHHHHEE
VRLSHSHIRIGSFQRLLVEEEPTHMAALVDYCLQHFPGPPPPVDAPGRDEPAVRLMHQVV
EEECCCEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
ERMADLAASYMVAGFVHGVLNTDNMNITGESFDYGPWRWLPAWDPGFTAAYFDHAGLYAF
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCCCHHHHHCCCEEEE
GRQPEALHWNCGQFAVALRALVEAEPLLAAINRFGELYMAAIGRRWCWRLGLQSRGPDAD
CCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AALVAACEKALREEQCEPSAFFHRHRGGREAEGELGEAMAGYTPVEGALDHDYWRENAPE
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHCCCCH
SMLIDEVETLWSAIEQRDDWAPLYDKIARLRRMGAAHGEPPVPAGHT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRSEPQASAYRPERAIESIAVWLASPVAAADFPRATLRFRNDRWAQTVGLASLSDDEWVQ
CCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHHHEECCCHHHHHHCCCCCCHHHHHH
HFARFEPLPDNLPEPLALKYHGHQFRVYNPEIGDGRGFLFAQLRDGEGRLLDLGTKGSGV
HHHHCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCCCC
TPYSRTADGRLTLKGAVREILATEMLEALGANTSKTFSVVETGEELERGDEPSPARSAVM
CCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEHHHHCCHHHHCCCCCCCHHHHEE
VRLSHSHIRIGSFQRLLVEEEPTHMAALVDYCLQHFPGPPPPVDAPGRDEPAVRLMHQVV
EEECCCEEECCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
ERMADLAASYMVAGFVHGVLNTDNMNITGESFDYGPWRWLPAWDPGFTAAYFDHAGLYAF
HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCCCHHHHHCCCEEEE
GRQPEALHWNCGQFAVALRALVEAEPLLAAINRFGELYMAAIGRRWCWRLGLQSRGPDAD
CCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
AALVAACEKALREEQCEPSAFFHRHRGGREAEGELGEAMAGYTPVEGALDHDYWRENAPE
HHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHCCCCH
SMLIDEVETLWSAIEQRDDWAPLYDKIARLRRMGAAHGEPPVPAGHT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]