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The map label for this gene is rarD [C]

Identifier: 85373398

GI number: 85373398

Start: 601713

End: 602627

Strand: Reverse

Name: rarD [C]

Synonym: ELI_02855

Alternate gene names: 85373398

Gene position: 602627-601713 (Counterclockwise)

Preceding gene: 85373401

Following gene: 85373396

Centisome position: 19.74

GC content: 62.95

Gene sequence:

>915_bases
ATGAACCCGACCCCTATCCCGCAACCCTCCGGCCTGCCGGCTGCGCTCGGGGCCTACATCATCTGGGGTTTCCTACCGCT
CTATCTCATCATCGTCAGCGCGGTGCCGCCATTCGAACTGGTCGGCTGGCGGATCATCTGGACGCTGCCGGTCTGCGTGC
TGATCGTGCTGGTGCGCAGGCAATGGCCCGAATTGCGCGCAGCGCTCGGGAATCGGCGGGTGCTGCTGGTCTTGCTGGGA
AGCTCGGCGCTGATCGCGACCAACTGGTTCGTCTACACCTGGGCGATCTACGAAAAGCAGGTCTATGCCGCGAGTTTGGG
CTATTACATCAATCCTTTGCTGAACGTGCTGCTCGGCACGCTGGTTTTGCGCGAGAAGCTGTCGCGCGCGCAATGGCTCG
CGGTTGGTCTGGCAGCGATCGGGGTCGCGGTGCTGGCAACGGGCGCGCTGACGACGTTGTGGATCAGCCTCACCCTCGCC
TTCAGCTTCGGGACCTACGGCCTGCTCAGGAAGCAGGTGCCGGTCGGATCGCTGCCTGGCCTCACCATCGAAAGCGCGCT
GCTGTTGCTCCCTGCCTGCGGCATCGCCGCATGGTATGCAGGAACGCCGGGCGGATCGTCATTCGGCGTGACGCCATGGC
TCAGCTTCTGGATCATGATGGGCGGCGTGTTCACCGCCATTCCCCTGCTGATGTTCGCAGTCGCAGCCAAGCGGATGGAC
TATTCACAGCTCGGCTTCATCCAGTTCCTCGCGCCCAGTATCGTTTTCGTGCTGGGACTGACGGTGTTCCGGCAGGAATT
GCTCTTGGCTCAAGCAATCTGTTTCGCCTTCATCTGGACCGCCTTGGCGATTTTCGTGTGGGACATGTGGGCGAAGAGCA
GAGCCCCCGCGAAGGCGGGGGCCTCAGGCCGCTAG

Upstream 100 bases:

>100_bases
TGCAACAGCCGCGTCAGATTCGAATTTTGCGATCAAGCGATATTCTGGCGTCGACGAAAGGTTGCTTGCGGGCGCATTTC
CATCCGCCTAGGGGCCATGG

Downstream 100 bases:

>100_bases
CTGGTCGCCTATTTCCGAGATTCCTGGTTTCACGAGAGCTCATTTAAGCCGCCAGTTAAGCTCCTGCCCGGCGTGGAATG
GCACGACCTTGCCGCCTTCC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNPTPIPQPSGLPAALGAYIIWGFLPLYLIIVSAVPPFELVGWRIIWTLPVCVLIVLVRRQWPELRAALGNRRVLLVLLG
SSALIATNWFVYTWAIYEKQVYAASLGYYINPLLNVLLGTLVLREKLSRAQWLAVGLAAIGVAVLATGALTTLWISLTLA
FSFGTYGLLRKQVPVGSLPGLTIESALLLLPACGIAAWYAGTPGGSSFGVTPWLSFWIMMGGVFTAIPLLMFAVAAKRMD
YSQLGFIQFLAPSIVFVLGLTVFRQELLLAQAICFAFIWTALAIFVWDMWAKSRAPAKAGASGR

Sequences:

>Translated_304_residues
MNPTPIPQPSGLPAALGAYIIWGFLPLYLIIVSAVPPFELVGWRIIWTLPVCVLIVLVRRQWPELRAALGNRRVLLVLLG
SSALIATNWFVYTWAIYEKQVYAASLGYYINPLLNVLLGTLVLREKLSRAQWLAVGLAAIGVAVLATGALTTLWISLTLA
FSFGTYGLLRKQVPVGSLPGLTIESALLLLPACGIAAWYAGTPGGSSFGVTPWLSFWIMMGGVFTAIPLLMFAVAAKRMD
YSQLGFIQFLAPSIVFVLGLTVFRQELLLAQAICFAFIWTALAIFVWDMWAKSRAPAKAGASGR
>Mature_304_residues
MNPTPIPQPSGLPAALGAYIIWGFLPLYLIIVSAVPPFELVGWRIIWTLPVCVLIVLVRRQWPELRAALGNRRVLLVLLG
SSALIATNWFVYTWAIYEKQVYAASLGYYINPLLNVLLGTLVLREKLSRAQWLAVGLAAIGVAVLATGALTTLWISLTLA
FSFGTYGLLRKQVPVGSLPGLTIESALLLLPACGIAAWYAGTPGGSSFGVTPWLSFWIMMGGVFTAIPLLMFAVAAKRMD
YSQLGFIQFLAPSIVFVLGLTVFRQELLLAQAICFAFIWTALAIFVWDMWAKSRAPAKAGASGR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=297, Percent_Identity=37.7104377104377, Blast_Score=187, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33061; Mature: 33061

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPTPIPQPSGLPAALGAYIIWGFLPLYLIIVSAVPPFELVGWRIIWTLPVCVLIVLVRR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QWPELRAALGNRRVLLVLLGSSALIATNWFVYTWAIYEKQVYAASLGYYINPLLNVLLGT
CCHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLREKLSRAQWLAVGLAAIGVAVLATGALTTLWISLTLAFSFGTYGLLRKQVPVGSLPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LTIESALLLLPACGIAAWYAGTPGGSSFGVTPWLSFWIMMGGVFTAIPLLMFAVAAKRMD
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSQLGFIQFLAPSIVFVLGLTVFRQELLLAQAICFAFIWTALAIFVWDMWAKSRAPAKAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ASGR
CCCC
>Mature Secondary Structure
MNPTPIPQPSGLPAALGAYIIWGFLPLYLIIVSAVPPFELVGWRIIWTLPVCVLIVLVRR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
QWPELRAALGNRRVLLVLLGSSALIATNWFVYTWAIYEKQVYAASLGYYINPLLNVLLGT
CCHHHHHHHCCCEEEEEEECCCHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLREKLSRAQWLAVGLAAIGVAVLATGALTTLWISLTLAFSFGTYGLLRKQVPVGSLPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LTIESALLLLPACGIAAWYAGTPGGSSFGVTPWLSFWIMMGGVFTAIPLLMFAVAAKRMD
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YSQLGFIQFLAPSIVFVLGLTVFRQELLLAQAICFAFIWTALAIFVWDMWAKSRAPAKAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ASGR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]