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The map label for this gene is rarA [H]

Identifier: 85373214

GI number: 85373214

Start: 432103

End: 433425

Strand: Reverse

Name: rarA [H]

Synonym: ELI_01935

Alternate gene names: 85373214

Gene position: 433425-432103 (Counterclockwise)

Preceding gene: 85373217

Following gene: 85373213

Centisome position: 14.2

GC content: 66.29

Gene sequence:

>1323_bases
ATGGCAGACCTGTTTGGAAACGATGCGGCGCCTGCGCGCGACGATGCCCCGCGCGAGGATGCGCCGCTGGCCGACCGGCT
GCGGCCGCGCGCGCTCGGCGAAGTCATCGGACAGGAGCACCTGACCGGCCCCAAAGGCGCGATCGGGCGCATGGTCGCCT
CGGGCAAGCTCTCCAGCATGGTCCTGTGGGGCCCTCCCGGCACCGGCAAGACCAGCACCGCGCGGCTGCTCGCCGACGCG
GTGGGCATGCGCTTCGTCGCAATCAGCGCGGTTTTCTCGGGCGTCGCCGATCTCAAAAAGGCCTTCGCCGAAGCCGACAG
GATGGCGGCAGCGGGCAGAAAGACGCTGTTGTTCGTGGACGAAATCCACCGCTTCAACCGCGCGCAGCAGGACGGCTTCC
TGCCTTTCGTCGAACGCGGCACGGTAACGCTGGTCGGCGCGACGACCGAGAACCCGAGCTTCGAACTCAACGCCGCGCTA
TTGAGCCGCGCGCAGGTGTTGATCCTGCACCGGCTCGACGCCGAGGCGCTCGGCAAACTGCTCGACCGCGCCGAAGCGCT
CGAAGGTCCCCTGCCGCTGACCGACGAAGCGCGCGCAGCGCTCATCGCCAGCGCCGATGGCGACGGGCGTTTCCTGCTCA
ATCAGGCCGAAACGCTTTACAATGCAAACATTGATGCGCCGCTCGGCCCAGCCGAACTGGGATTGTTCCTCCAGCGGCGC
GTGGCGGTCTACGACAAGGACCGCGAGGGTCATTACAATCTCATCAGCGCGCTGCACAAGAGCCTGCGCGGGAGCGACCC
GCAGGCTGCGCTCTACTACCTCGCGCGGATGCTGACGGCGGGCGAGGAACCGCTCTACGTCCTGCGCCGCTTGGTCCGTT
TCGCCAGCGAAGACATCGGCCTCGCGGACCCGCAGGCCCTGACGCAATGCCTTGCCGCCAAGGACGCCTATGAGTTTCTC
GGCAGCCCCGAAGGCGAGCTGGCGATCGTCCAGGCCTGCCTCTATTGCGCCACCGCGCCCAAATCGAATGCCGCCTATGC
CGCGCAGAAAGCCGCCTTCCGCAGCGCCAAGGAAACCGGCAGCCTGATGCCGCCGCAAAACATCCTCAACGCGCCGACGA
AGTTGATGAAGGAAATCGGCTACGGCGCGGGTTATGCCTATGACCACGACGCCGATGACGGCTTCTCGGGCGACGATTAC
TGGCCCGAAGAGATGGAGCCGCAGACCTATTACGCACCGGTCGAACGTGGCTTCGAGCGCAAGGTGAAGGAGCGTATCGC
CTATTGGGACAATCTGCGCCGGGAGCGGCGCGATGCGTCCTGA

Upstream 100 bases:

>100_bases
ATTCTCCCGATAGGTCTTGCGGATTCAAAGATATATCTTTGCACTGCAGCTTCAAGAGGCCGGTGGCATTTTCCGACGAG
CGGCCTATCTCGCTCCATGA

Downstream 100 bases:

>100_bases
CCGCTTCACCCACTTTCTCGCCATCGACTGGTCCGGCGCGAAGGGGGAGCGGCAAAGGGGAATCGCCCTTTCGCTCGCCG
ATGCTGCAGGCGGCCCGCCT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MADLFGNDAAPARDDAPREDAPLADRLRPRALGEVIGQEHLTGPKGAIGRMVASGKLSSMVLWGPPGTGKTSTARLLADA
VGMRFVAISAVFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQDGFLPFVERGTVTLVGATTENPSFELNAAL
LSRAQVLILHRLDAEALGKLLDRAEALEGPLPLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRR
VAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFASEDIGLADPQALTQCLAAKDAYEFL
GSPEGELAIVQACLYCATAPKSNAAYAAQKAAFRSAKETGSLMPPQNILNAPTKLMKEIGYGAGYAYDHDADDGFSGDDY
WPEEMEPQTYYAPVERGFERKVKERIAYWDNLRRERRDAS

Sequences:

>Translated_440_residues
MADLFGNDAAPARDDAPREDAPLADRLRPRALGEVIGQEHLTGPKGAIGRMVASGKLSSMVLWGPPGTGKTSTARLLADA
VGMRFVAISAVFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQDGFLPFVERGTVTLVGATTENPSFELNAAL
LSRAQVLILHRLDAEALGKLLDRAEALEGPLPLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRR
VAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFASEDIGLADPQALTQCLAAKDAYEFL
GSPEGELAIVQACLYCATAPKSNAAYAAQKAAFRSAKETGSLMPPQNILNAPTKLMKEIGYGAGYAYDHDADDGFSGDDY
WPEEMEPQTYYAPVERGFERKVKERIAYWDNLRRERRDAS
>Mature_439_residues
ADLFGNDAAPARDDAPREDAPLADRLRPRALGEVIGQEHLTGPKGAIGRMVASGKLSSMVLWGPPGTGKTSTARLLADAV
GMRFVAISAVFSGVADLKKAFAEADRMAAAGRKTLLFVDEIHRFNRAQQDGFLPFVERGTVTLVGATTENPSFELNAALL
SRAQVLILHRLDAEALGKLLDRAEALEGPLPLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRRV
AVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFASEDIGLADPQALTQCLAAKDAYEFLG
SPEGELAIVQACLYCATAPKSNAAYAAQKAAFRSAKETGSLMPPQNILNAPTKLMKEIGYGAGYAYDHDADDGFSGDDYW
PEEMEPQTYYAPVERGFERKVKERIAYWDNLRRERRDAS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=432, Percent_Identity=42.3611111111111, Blast_Score=310, Evalue=2e-84,
Organism=Homo sapiens, GI18426904, Length=432, Percent_Identity=37.962962962963, Blast_Score=254, Evalue=1e-67,
Organism=Homo sapiens, GI31563534, Length=229, Percent_Identity=27.0742358078603, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1787119, Length=419, Percent_Identity=47.255369928401, Blast_Score=357, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6324111, Length=422, Percent_Identity=40.9952606635071, Blast_Score=298, Evalue=1e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=219, Percent_Identity=29.6803652968037, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47850; Mature: 47718

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLFGNDAAPARDDAPREDAPLADRLRPRALGEVIGQEHLTGPKGAIGRMVASGKLSSM
CCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEE
VLWGPPGTGKTSTARLLADAVGMRFVAISAVFSGVADLKKAFAEADRMAAAGRKTLLFVD
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
EIHRFNRAQQDGFLPFVERGTVTLVGATTENPSFELNAALLSRAQVLILHRLDAEALGKL
HHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
LDRAEALEGPLPLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRR
HHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHHHHH
VAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFASEDIG
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LADPQALTQCLAAKDAYEFLGSPEGELAIVQACLYCATAPKSNAAYAAQKAAFRSAKETG
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
SLMPPQNILNAPTKLMKEIGYGAGYAYDHDADDGFSGDDYWPEEMEPQTYYAPVERGFER
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHH
KVKERIAYWDNLRRERRDAS
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ADLFGNDAAPARDDAPREDAPLADRLRPRALGEVIGQEHLTGPKGAIGRMVASGKLSSM
CCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEE
VLWGPPGTGKTSTARLLADAVGMRFVAISAVFSGVADLKKAFAEADRMAAAGRKTLLFVD
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
EIHRFNRAQQDGFLPFVERGTVTLVGATTENPSFELNAALLSRAQVLILHRLDAEALGKL
HHHHHHHHHCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
LDRAEALEGPLPLTDEARAALIASADGDGRFLLNQAETLYNANIDAPLGPAELGLFLQRR
HHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHHHHH
VAVYDKDREGHYNLISALHKSLRGSDPQAALYYLARMLTAGEEPLYVLRRLVRFASEDIG
HHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
LADPQALTQCLAAKDAYEFLGSPEGELAIVQACLYCATAPKSNAAYAAQKAAFRSAKETG
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
SLMPPQNILNAPTKLMKEIGYGAGYAYDHDADDGFSGDDYWPEEMEPQTYYAPVERGFER
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHHHHH
KVKERIAYWDNLRRERRDAS
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]