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The map label for this gene is ygcF [C]

Identifier: 85373083

GI number: 85373083

Start: 295038

End: 295775

Strand: Reverse

Name: ygcF [C]

Synonym: ELI_01280

Alternate gene names: 85373083

Gene position: 295775-295038 (Counterclockwise)

Preceding gene: 85373084

Following gene: 85373075

Centisome position: 9.69

GC content: 63.41

Gene sequence:

>738_bases
ATGGCGCAACTCACGCTCGCGACCGACGATACCGGGGGTCCGGAAATTTTCGCCTCCGTCCAAGGCGAAGGCCTTTCGGC
CGGTGCGCCGGTCGCCTTCGTGCGCCTGTCGCGCTGCAACCTCGCCTGCGTCTGGTGCGACACGGCCTACACCTGGCACT
TCGAAGGCGATACTCGCCCGCATCGCAGCGGCGAGACGTTCGAGCGCAAGGCCAATCAGGTCTCTCTCGATCCCGCCGAT
GTGGCGGAGCGGATCGCGGCGCTGGGACAGAAGCGGCTGGTCATTACCGGCGGCGAGCCGCTGATGCAGGGCGGGCCGCT
GGCGGAGCTGCTCGAGCTTTTGCCCGATATGACTGTGGAAATCGAAACCAACGGCACGACCAAGGCCCCGCCCCGGCTCG
ATATCCGCATCGACCAGTACAATGTCAGTCCCAAGCTCGCGCATTCGGGCAATCCGGCGGAGCTGGCGCTGATCACCGAA
CGGTTGGACAGCTACGCGCTCGATGACCGCGCCTTCTTCAAATTCGTCATCGCCGAACCCAGCGATGTCGAGGAAGTGCT
AACCCTGCAACGCGCACATGCCATCCCGGCCAAGCGCATCTTCCTGATGCCAGAGGGTACCGACAGCGAGACACTGCGCG
AACGCGAGCAATGGCTGGTACCGCTATGCCTTGAGCATGGCTTCAGGATGAGTGACCGGCTGCATATCCATCTGTTCGGA
GATACGCGGGGTACGTAA

Upstream 100 bases:

>100_bases
CGGAATTATAGTTATCCTCGTAAAATCAGATATTTAGACCGACCATCCCCGGGTGACACCCTGTCACCTTTGTCACCCAA
GTAGGAAATTTTCGCATACC

Downstream 100 bases:

>100_bases
TTTGTTTGGCCTCAAGCGCCGGCGGCCGCATCCGCGGCCTTGGGCTATCCTCCGGGGGCCCGACCCCTTCGGGGCCACCC
CTCCGGTCGCGCAGTCGCGC

Product: coenzyme PQQ synthesis protein, conjectural

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAQLTLATDDTGGPEIFASVQGEGLSAGAPVAFVRLSRCNLACVWCDTAYTWHFEGDTRPHRSGETFERKANQVSLDPAD
VAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIETNGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITE
RLDSYALDDRAFFKFVIAEPSDVEEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEHGFRMSDRLHIHLFG
DTRGT

Sequences:

>Translated_245_residues
MAQLTLATDDTGGPEIFASVQGEGLSAGAPVAFVRLSRCNLACVWCDTAYTWHFEGDTRPHRSGETFERKANQVSLDPAD
VAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIETNGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITE
RLDSYALDDRAFFKFVIAEPSDVEEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEHGFRMSDRLHIHLFG
DTRGT
>Mature_244_residues
AQLTLATDDTGGPEIFASVQGEGLSAGAPVAFVRLSRCNLACVWCDTAYTWHFEGDTRPHRSGETFERKANQVSLDPADV
AERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVEIETNGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITER
LDSYALDDRAFFKFVIAEPSDVEEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEHGFRMSDRLHIHLFGD
TRGT

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygcF and H.influenzae HI_1189 [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=236, Percent_Identity=28.3898305084746, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27078; Mature: 26947

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLTLATDDTGGPEIFASVQGEGLSAGAPVAFVRLSRCNLACVWCDTAYTWHFEGDTRP
CCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEECCCCCC
HRSGETFERKANQVSLDPADVAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVE
CCCCCHHHHCCCEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEE
IETNGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITERLDSYALDDRAFFKFVIAEP
EECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCC
SDVEEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEHGFRMSDRLHIHLFG
CCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
DTRGT
CCCCC
>Mature Secondary Structure 
AQLTLATDDTGGPEIFASVQGEGLSAGAPVAFVRLSRCNLACVWCDTAYTWHFEGDTRP
CEEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEECCCEEEEEECCEEEEEECCCCCC
HRSGETFERKANQVSLDPADVAERIAALGQKRLVITGGEPLMQGGPLAELLELLPDMTVE
CCCCCHHHHCCCEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEE
IETNGTTKAPPRLDIRIDQYNVSPKLAHSGNPAELALITERLDSYALDDRAFFKFVIAEP
EECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEEEEECCC
SDVEEVLTLQRAHAIPAKRIFLMPEGTDSETLREREQWLVPLCLEHGFRMSDRLHIHLFG
CCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
DTRGT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]