Click here to switch to the map view.

The map label for this gene is yagA [H]

Identifier: 85373029

GI number: 85373029

Start: 239376

End: 240356

Strand: Reverse

Name: yagA [H]

Synonym: ELI_01010

Alternate gene names: 85373029

Gene position: 240356-239376 (Counterclockwise)

Preceding gene: 162007988

Following gene: 85373028

Centisome position: 7.87

GC content: 59.02

Gene sequence:

>981_bases
ATGAGATATCCCGCATCCGAGAAGCTGGGGATTATCCGGATCGTCGAGCAGTCGCACCTGCCAGCCACGCGCACGCTGGA
CCAGCTCGGCGTGGCAAGGCGCACTTTCCACCGCTGGTATGACCGCTTCCTTGAAGGCGGACCGGAGGCACTGGCAGACC
GGCCATCTGCGCCAAGCCGGGTGTGGAACAGGATCGCGCCCGAGGTCCAGGATGAGATCGTCGAGATGGCGCTGGAACAG
ACCGATCTGTCTCCGCGCGAACTGGCGGTGCGCTTCACCGACGAGAAGCGCTACTTCGTATCGGAAGCCACGGTTTACCT
TCTGCTCAAGGCACATGATCTGATCACCAGCCCGGCCTACACGGTCATCAAGGCGGCAGAGGTGTTCCATACGAAGACCA
CCCGCCCGAACGAGATGTGGCAGACGGACTTTACCTACTTCAAGATCATCGGGTGGGGTTGGATGTATCTATCGACGGTG
CTCGACGATTACTCACGCTACATCATCGCCTGGCGGCTGTGTTCGACCATGTGCGCCAGCGACGTCACTGAAACGCTCGA
TATGGCGCTGAAAGCCTCAGGCTGTGATCATGCCAATGTCTTGCATAGGCCGCGTCTGCTCAGCGACAATGGCCCCAACT
ACATCGCCGGGGAACTGGCGGATTATCTCGACGGCAAACAAATGGACCATGTGCGCGGTGCGCCCTTCCATCCGCAGACA
CAGGGCAAGATCGAGCGCTGGTACCAGACATTGAAGAACCGCGTCCTGCTGGAAAACTACTGCCTGCCCGGCGATCTCGA
ACAGCAAATCGAGGCGTTCGTCGAGCACTACAATCACCAGCGCTACCACGAGAGCCTCGACAATGTGACACCTGCCGACG
CCTACTTCGGCAGGGCACCCGAGATCATCAAACGACGAGAAAGGATCAAACGACAGACACTCGAATATCGGCGCTTGCAA
CACCGCAAGCTCGCCGCTTAA

Upstream 100 bases:

>100_bases
TTCGCCGTGAGGCCCGCGATCTGAAGGAATGCGTAGCGGACCTCACCCTGGAGAATCGGTTGCTCAAAAAAAGCATGATC
GCGGATGGGGGAGACGAAGA

Downstream 100 bases:

>100_bases
ACATCAATCCAAGACGAGGCCCACACTCCGCAAGCACACGCCGCGAGTTGTGCCAAATGTTCTGACGACGGACACCTCCC
TGTAGCGTAGGGAGTCGAGA

Product: ISCc3, transposase OrfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRYPASEKLGIIRIVEQSHLPATRTLDQLGVARRTFHRWYDRFLEGGPEALADRPSAPSRVWNRIAPEVQDEIVEMALEQ
TDLSPRELAVRFTDEKRYFVSEATVYLLLKAHDLITSPAYTVIKAAEVFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTV
LDDYSRYIIAWRLCSTMCASDVTETLDMALKASGCDHANVLHRPRLLSDNGPNYIAGELADYLDGKQMDHVRGAPFHPQT
QGKIERWYQTLKNRVLLENYCLPGDLEQQIEAFVEHYNHQRYHESLDNVTPADAYFGRAPEIIKRRERIKRQTLEYRRLQ
HRKLAA

Sequences:

>Translated_326_residues
MRYPASEKLGIIRIVEQSHLPATRTLDQLGVARRTFHRWYDRFLEGGPEALADRPSAPSRVWNRIAPEVQDEIVEMALEQ
TDLSPRELAVRFTDEKRYFVSEATVYLLLKAHDLITSPAYTVIKAAEVFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTV
LDDYSRYIIAWRLCSTMCASDVTETLDMALKASGCDHANVLHRPRLLSDNGPNYIAGELADYLDGKQMDHVRGAPFHPQT
QGKIERWYQTLKNRVLLENYCLPGDLEQQIEAFVEHYNHQRYHESLDNVTPADAYFGRAPEIIKRRERIKRQTLEYRRLQ
HRKLAA
>Mature_326_residues
MRYPASEKLGIIRIVEQSHLPATRTLDQLGVARRTFHRWYDRFLEGGPEALADRPSAPSRVWNRIAPEVQDEIVEMALEQ
TDLSPRELAVRFTDEKRYFVSEATVYLLLKAHDLITSPAYTVIKAAEVFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTV
LDDYSRYIIAWRLCSTMCASDVTETLDMALKASGCDHANVLHRPRLLSDNGPNYIAGELADYLDGKQMDHVRGAPFHPQT
QGKIERWYQTLKNRVLLENYCLPGDLEQQIEAFVEHYNHQRYHESLDNVTPADAYFGRAPEIIKRRERIKRQTLEYRRLQ
HRKLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=281, Percent_Identity=28.1138790035587, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 38033; Mature: 38033

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPASEKLGIIRIVEQSHLPATRTLDQLGVARRTFHRWYDRFLEGGPEALADRPSAPSR
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VWNRIAPEVQDEIVEMALEQTDLSPRELAVRFTDEKRYFVSEATVYLLLKAHDLITSPAY
HHHHHCHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
TVIKAAEVFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDYSRYIIAWRLCSTMCAS
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTETLDMALKASGCDHANVLHRPRLLSDNGPNYIAGELADYLDGKQMDHVRGAPFHPQT
HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
QGKIERWYQTLKNRVLLENYCLPGDLEQQIEAFVEHYNHQRYHESLDNVTPADAYFGRAP
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCH
EIIKRRERIKRQTLEYRRLQHRKLAA
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYPASEKLGIIRIVEQSHLPATRTLDQLGVARRTFHRWYDRFLEGGPEALADRPSAPSR
CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHH
VWNRIAPEVQDEIVEMALEQTDLSPRELAVRFTDEKRYFVSEATVYLLLKAHDLITSPAY
HHHHHCHHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
TVIKAAEVFHTKTTRPNEMWQTDFTYFKIIGWGWMYLSTVLDDYSRYIIAWRLCSTMCAS
HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVTETLDMALKASGCDHANVLHRPRLLSDNGPNYIAGELADYLDGKQMDHVRGAPFHPQT
HHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
QGKIERWYQTLKNRVLLENYCLPGDLEQQIEAFVEHYNHQRYHESLDNVTPADAYFGRAP
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCH
EIIKRRERIKRQTLEYRRLQHRKLAA
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]