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The map label for this gene is yfdE [H]

Identifier: 85373020

GI number: 85373020

Start: 228702

End: 229559

Strand: Reverse

Name: yfdE [H]

Synonym: ELI_00965

Alternate gene names: 85373020

Gene position: 229559-228702 (Counterclockwise)

Preceding gene: 85373028

Following gene: 85373017

Centisome position: 7.52

GC content: 59.44

Gene sequence:

>858_bases
ATGGAACGGTTGGGTCTTGGACCCGATGTTTGCCTCGATCGCAATCCGGCGCTCGTGTTCGGCCGGATGACTGGTTGGGG
GCAGGATGGACCTCTCGCGCAGACCGCCGGCCACGACATCAACTATATCGCACTGTCCGGCGCGCTCTGGTATGCTGGCG
AACCGGGTGCGCTTCCGATGGCACCTCCCGGACTCGTCGGCGACATCGGCGGTGGCGCGCTCTATCTGGCAGTCGGCCTG
CTCGCCGCCATCCTTAGCGCCCGTGAATCGGGGAAAGGACAAGTCGTGGATGCCGCCATCGTGGATGGAAGCGCGCATAT
GATGAACCTGCTGCTCAGTTTGAAAGCAACAGGACATTTCGTCAACGAGCGCGGTCGCAGCATCCTTGACGGTCCGCACT
GGTATTCGACCTATCGATGCGCGGACGATCGATACATCTCTCTGGGGTCGCTCGAACCGAAATTTTACACATTGCTTTGC
CAGAAGCTGGGCATTGCGGATCAACCGGATTTTGCAAACGGCTACGATCCGGCCTGCTGGCCAGACCTCAGACATCGGTT
CGAGGAACTATTCCGACGAAGGACGCGCGACGAATGGATGACCTTGCTGGAGGGGACCGATGCATGTTTCGCGCCGGTGT
TAGATCCGGACGAAGCCGCTTCGCATCCGCATATGGCGGCCCGACAAATCTACAAGAAAATCGATGGAATCATTCAGGCA
ATGCCCTCGCCGCGCTTCTCGAACACACCGCCACCCGAGCCGACCGTCAAGTCGGCCGGGCCGAATCAGAAACGGACAAT
CTTGCAGCAATGGCGAACGACGCGCCGCCGCCATGTATCTCGATCGAAACTTTCGTGA

Upstream 100 bases:

>100_bases
ATTTGTATCCCTCGATTTGAAGCAGTCCGCAGCGGTCGAGCACGTCCTCGATCTTGTTGAGCACAGCCATGCGATCATCG
AGGGCATGCGTCCTGGTGTA

Downstream 100 bases:

>100_bases
CATGAGCCGCAGTGCTCTCTCCACTGGTTTCAGAGTCGGACCGCCTTGCCACGTATGATCGTGACAGACGTCATGGGTCT
CATTCCAGTCGAACCTCACA

Product: alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MERLGLGPDVCLDRNPALVFGRMTGWGQDGPLAQTAGHDINYIALSGALWYAGEPGALPMAPPGLVGDIGGGALYLAVGL
LAAILSARESGKGQVVDAAIVDGSAHMMNLLLSLKATGHFVNERGRSILDGPHWYSTYRCADDRYISLGSLEPKFYTLLC
QKLGIADQPDFANGYDPACWPDLRHRFEELFRRRTRDEWMTLLEGTDACFAPVLDPDEAASHPHMAARQIYKKIDGIIQA
MPSPRFSNTPPPEPTVKSAGPNQKRTILQQWRTTRRRHVSRSKLS

Sequences:

>Translated_285_residues
MERLGLGPDVCLDRNPALVFGRMTGWGQDGPLAQTAGHDINYIALSGALWYAGEPGALPMAPPGLVGDIGGGALYLAVGL
LAAILSARESGKGQVVDAAIVDGSAHMMNLLLSLKATGHFVNERGRSILDGPHWYSTYRCADDRYISLGSLEPKFYTLLC
QKLGIADQPDFANGYDPACWPDLRHRFEELFRRRTRDEWMTLLEGTDACFAPVLDPDEAASHPHMAARQIYKKIDGIIQA
MPSPRFSNTPPPEPTVKSAGPNQKRTILQQWRTTRRRHVSRSKLS
>Mature_285_residues
MERLGLGPDVCLDRNPALVFGRMTGWGQDGPLAQTAGHDINYIALSGALWYAGEPGALPMAPPGLVGDIGGGALYLAVGL
LAAILSARESGKGQVVDAAIVDGSAHMMNLLLSLKATGHFVNERGRSILDGPHWYSTYRCADDRYISLGSLEPKFYTLLC
QKLGIADQPDFANGYDPACWPDLRHRFEELFRRRTRDEWMTLLEGTDACFAPVLDPDEAASHPHMAARQIYKKIDGIIQA
MPSPRFSNTPPPEPTVKSAGPNQKRTILQQWRTTRRRHVSRSKLS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=252, Percent_Identity=37.6984126984127, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI42794625, Length=252, Percent_Identity=37.6984126984127, Blast_Score=193, Evalue=2e-49,
Organism=Homo sapiens, GI266458393, Length=165, Percent_Identity=42.4242424242424, Blast_Score=144, Evalue=9e-35,
Organism=Homo sapiens, GI266458397, Length=162, Percent_Identity=41.9753086419753, Blast_Score=141, Evalue=7e-34,
Organism=Homo sapiens, GI300863128, Length=261, Percent_Identity=21.0727969348659, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI300863124, Length=283, Percent_Identity=21.2014134275618, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87082093, Length=246, Percent_Identity=25.609756097561, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=251, Percent_Identity=33.8645418326693, Blast_Score=150, Evalue=6e-37,
Organism=Caenorhabditis elegans, GI32564160, Length=247, Percent_Identity=31.1740890688259, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI24585488, Length=255, Percent_Identity=38.8235294117647, Blast_Score=176, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24648431, Length=272, Percent_Identity=26.8382352941176, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 31293; Mature: 31293

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERLGLGPDVCLDRNPALVFGRMTGWGQDGPLAQTAGHDINYIALSGALWYAGEPGALPM
CCCCCCCCCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCEEEEEECEEEECCCCCCCCC
APPGLVGDIGGGALYLAVGLLAAILSARESGKGQVVDAAIVDGSAHMMNLLLSLKATGHF
CCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
VNERGRSILDGPHWYSTYRCADDRYISLGSLEPKFYTLLCQKLGIADQPDFANGYDPACW
HHHCCCCCCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDLRHRFEELFRRRTRDEWMTLLEGTDACFAPVLDPDEAASHPHMAARQIYKKIDGIIQA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
MPSPRFSNTPPPEPTVKSAGPNQKRTILQQWRTTRRRHVSRSKLS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MERLGLGPDVCLDRNPALVFGRMTGWGQDGPLAQTAGHDINYIALSGALWYAGEPGALPM
CCCCCCCCCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCEEEEEECEEEECCCCCCCCC
APPGLVGDIGGGALYLAVGLLAAILSARESGKGQVVDAAIVDGSAHMMNLLLSLKATGHF
CCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
VNERGRSILDGPHWYSTYRCADDRYISLGSLEPKFYTLLCQKLGIADQPDFANGYDPACW
HHHCCCCCCCCCCCCCEEEECCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDLRHRFEELFRRRTRDEWMTLLEGTDACFAPVLDPDEAASHPHMAARQIYKKIDGIIQA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHH
MPSPRFSNTPPPEPTVKSAGPNQKRTILQQWRTTRRRHVSRSKLS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]