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The map label for this gene is traB [H]

Identifier: 85373008

GI number: 85373008

Start: 217212

End: 218519

Strand: Reverse

Name: traB [H]

Synonym: ELI_00905

Alternate gene names: 85373008

Gene position: 218519-217212 (Counterclockwise)

Preceding gene: 85373009

Following gene: 85373007

Centisome position: 7.16

GC content: 67.81

Gene sequence:

>1308_bases
ATGGCTGACACCGATACACGCGCCGCACCCGCAGAACAGCCGCGGGACGAAAGTCGCTCCGAAGCCCGGCGCGACCTGAA
CAAGACCGTCGCGCAGCGTCAGAAGCTTCTCCTCGCAGGGATCGGCGGGGTCGCACTCATTGCCGGTTCGATGTTTATCT
TCGGCGGAGACGACGCGGAGGATGGAGAAGGCGCGGGTTCGACCACGATCGAGACAGGCGCGCTGGTCAACCGCAACCTC
TCACAGCGCGAGTTTGTCGCCACCTATGGCAACAGGCTCGATGCGCAGGGCCGCGCGATCAAGGACCTCCAGGAGAGCCA
GCTCCCCAAGGCCTCGATCGAACAGGAACTCGAGACGCTGCGCGGCGAGAACGCGCGGATGCTGAGCGACGGCCAGGCGG
CGATCGACGCGATCTCGGCCGAGAACGCGGCGCTGCGCTCCGAACTCGAGACTCAGCGCGCCTATCCTCCGGTCGCGCCG
GCTACCCCGCTTGATCCCCGTGCATTGGGCGCTGCACCGGGCGCCGCACCCGCGGCCCTCGATCCAAGTGCGGGCCCCAT
GGCCGAGCCGAAGGCGAGCCTCCTGAGCTTCAGCGGTGAGAAGCCCGGCACGGCAGGCAAGAAGGTCGACGCCAATGCGC
CGCCCCTGCTGCTCGAGGCGAGCCGCGACTATTTGCCGCCCAACAGCTACGCGCCGGCAACCGTGATCGTCGGGGTCGAT
GCCTCGACAGGCGTCACCAGCCAGAGCGATCCGCTGCCCGTGGTGCTGCGCATCACCGGCCCCGCGCGCTCGGTTCTGAG
GGGCAATCGCTTGCTTACGACCGACCTCACCGGCTGTCTCGTCAACGGCGCGGCGCGCGGCGATCTCTCGGCCGAGAAGG
TCTACGTCAAGCTGGTGCGGATGACCTGCGCGCAGCCCGGCGGGCGCTTCGCGGTGAGCGAGGTCAAGGGGTTCATCGCC
TTTGCCGGAAAGTCGGGCGTGCGCGGCCGTGTCGTCAGCCGTGAAGGCAGCCTTGTCAGCCAGGCGCTGCTCGCCGGGAT
CGTCGGCGGGTTCGGACGCGGCTTCTCTGCCAACGCCAACGGCATCTTCGCCGGTCAGGTCGGCAGCGACGGCAAGCGCG
AGGCGCTCTCGCCGACCGACATCCTTGCGGGCGGCTTCGGCCAGGGCGCGGGCGAAGCCGCCGACACGGTCAGCAAATAC
CTCATCGAACGCGCAGAACAATACCAACCCGTCGTCGAGATGCCGACCGGCATCGAGGTCGAGATAGTCTTTCTCGACGG
CGTCCATGTCAGGAGCACAGACCAATGA

Upstream 100 bases:

>100_bases
CGCCCGCAGGCGCGCTTGCCTTTGCCTTTGGCCGCGACACGCTCGCCCCCGGCGAGACCACCCAGGCCTTCCTCGTATTT
GCCAAGGGAGGGCTCGAATA

Downstream 100 bases:

>100_bases
ATTTCTCCCACCACCGGCCGGGCCTGAAAGCCCGCGCCGCGCACATATCGCTTGCCGCCGCCAGCGCAGCCGCCCTCCTC
ACCAGCGGCGTTGCCGTGCT

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MADTDTRAAPAEQPRDESRSEARRDLNKTVAQRQKLLLAGIGGVALIAGSMFIFGGDDAEDGEGAGSTTIETGALVNRNL
SQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETQRAYPPVAP
ATPLDPRALGAAPGAAPAALDPSAGPMAEPKASLLSFSGEKPGTAGKKVDANAPPLLLEASRDYLPPNSYAPATVIVGVD
ASTGVTSQSDPLPVVLRITGPARSVLRGNRLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIA
FAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAGQVGSDGKREALSPTDILAGGFGQGAGEAADTVSKY
LIERAEQYQPVVEMPTGIEVEIVFLDGVHVRSTDQ

Sequences:

>Translated_435_residues
MADTDTRAAPAEQPRDESRSEARRDLNKTVAQRQKLLLAGIGGVALIAGSMFIFGGDDAEDGEGAGSTTIETGALVNRNL
SQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETQRAYPPVAP
ATPLDPRALGAAPGAAPAALDPSAGPMAEPKASLLSFSGEKPGTAGKKVDANAPPLLLEASRDYLPPNSYAPATVIVGVD
ASTGVTSQSDPLPVVLRITGPARSVLRGNRLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIA
FAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAGQVGSDGKREALSPTDILAGGFGQGAGEAADTVSKY
LIERAEQYQPVVEMPTGIEVEIVFLDGVHVRSTDQ
>Mature_434_residues
ADTDTRAAPAEQPRDESRSEARRDLNKTVAQRQKLLLAGIGGVALIAGSMFIFGGDDAEDGEGAGSTTIETGALVNRNLS
QREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETLRGENARMLSDGQAAIDAISAENAALRSELETQRAYPPVAPA
TPLDPRALGAAPGAAPAALDPSAGPMAEPKASLLSFSGEKPGTAGKKVDANAPPLLLEASRDYLPPNSYAPATVIVGVDA
STGVTSQSDPLPVVLRITGPARSVLRGNRLLTTDLTGCLVNGAARGDLSAEKVYVKLVRMTCAQPGGRFAVSEVKGFIAF
AGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANANGIFAGQVGSDGKREALSPTDILAGGFGQGAGEAADTVSKYL
IERAEQYQPVVEMPTGIEVEIVFLDGVHVRSTDQ

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45022; Mature: 44891

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTDTRAAPAEQPRDESRSEARRDLNKTVAQRQKLLLAGIGGVALIAGSMFIFGGDDAE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCC
DGEGAGSTTIETGALVNRNLSQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETL
CCCCCCCCEEECCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
RGENARMLSDGQAAIDAISAENAALRSELETQRAYPPVAPATPLDPRALGAAPGAAPAAL
CCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCC
DPSAGPMAEPKASLLSFSGEKPGTAGKKVDANAPPLLLEASRDYLPPNSYAPATVIVGVD
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECC
ASTGVTSQSDPLPVVLRITGPARSVLRGNRLLTTDLTGCLVNGAARGDLSAEKVYVKLVR
CCCCCCCCCCCCEEEEEECCCHHHHHCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHH
MTCAQPGGRFAVSEVKGFIAFAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANAN
HHHCCCCCCEEHHHHCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
GIFAGQVGSDGKREALSPTDILAGGFGQGAGEAADTVSKYLIERAEQYQPVVEMPTGIEV
EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEE
EIVFLDGVHVRSTDQ
EEEEECCEEECCCCC
>Mature Secondary Structure 
ADTDTRAAPAEQPRDESRSEARRDLNKTVAQRQKLLLAGIGGVALIAGSMFIFGGDDAE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCCCC
DGEGAGSTTIETGALVNRNLSQREFVATYGNRLDAQGRAIKDLQESQLPKASIEQELETL
CCCCCCCCEEECCHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
RGENARMLSDGQAAIDAISAENAALRSELETQRAYPPVAPATPLDPRALGAAPGAAPAAL
CCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCC
DPSAGPMAEPKASLLSFSGEKPGTAGKKVDANAPPLLLEASRDYLPPNSYAPATVIVGVD
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECC
ASTGVTSQSDPLPVVLRITGPARSVLRGNRLLTTDLTGCLVNGAARGDLSAEKVYVKLVR
CCCCCCCCCCCCEEEEEECCCHHHHHCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHH
MTCAQPGGRFAVSEVKGFIAFAGKSGVRGRVVSREGSLVSQALLAGIVGGFGRGFSANAN
HHHCCCCCCEEHHHHCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCC
GIFAGQVGSDGKREALSPTDILAGGFGQGAGEAADTVSKYLIERAEQYQPVVEMPTGIEV
EEEEECCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCEE
EIVFLDGVHVRSTDQ
EEEEECCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7915817; 8655498 [H]