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The map label for this gene is traH [H]

Identifier: 85372996

GI number: 85372996

Start: 205547

End: 206983

Strand: Reverse

Name: traH [H]

Synonym: ELI_00845

Alternate gene names: 85372996

Gene position: 206983-205547 (Counterclockwise)

Preceding gene: 85372997

Following gene: 85372995

Centisome position: 6.78

GC content: 63.88

Gene sequence:

>1437_bases
ATGATTACTAGCATTCGCAATGCGGCGCTGACCCTCGCCGCCGCCAGCATGATCGCTTCCCCGCTTGCCGCCAACGTTGG
CGACAGCATGGACCGCTTCATGGACGACATGGGCGCGGCGGCCAATGTCACGGGTCCGACCGCCTTCGAAGGCCAGTCGG
CAGGCTATTACAGCCTCGGCAATGTCTGGACGCGCTTCCCCCAGAAGACGACTAGCATCGCCAATCTCCAGCTGCCGCGT
GCCCGCGCTGGTTGCGGCGGTATCGATATCTTCGCCGGGTCCTTCTCCTTCATCAACGCAAGCGAGATGGTCGCGCTTCT
GAAGGCGGTCGCGAACAACGCGGTCGGGTTCGCCTTCAGCCTCGCGATCGATACCGTTTGCCCCGAGTGCAACAAGATCA
TGCAGGAGTTCAGCCAGAAGGCGCAACTCATGAACAACCTCTCGATCAACTCCTGCGAAATGGCGCAGGGGCTGGTCGGC
GGCCTGTGGCCCAAGGGTGATTTGGCCGACAAGGCGATCTGCGAAGCAATCGGCAATTCGGAAGGCATCTTCACCGACTA
TGCCGCGGCCAAGCACGGCTGCGGCACGCGCGGGCAGCGCGCCTCGACCAATGAAGGCGCCGGTGCCGATTACGCCGACG
TCAATCCCGGCGTAGCCCGCAACTACACCTGGCACGTCCTCAAGAAGAGCGCCTTTTTCAACCCCGGTGGCACTTTCGAC
CGCGAGCTTGCCGAATACGCCATGACGCTCATCGGCACGGTGATCTACGTGCCGCCCAAGGACGATGAGGCAGGCAAGTT
CGTGCCATTTGCAGGCGATGCGTCGTCCACCCTGGTGAGCGCGCTGCTCGACGGGACGCAGGGCCAGACGGTCAGGGTGT
TCCGCTGCGACGAGACCGATCTTTGCCTCAATCCGACCTTCGAACAGATGAGCCTTGCCAACGCCAAGGCGATCCGCCCG
CGCGTCGCGCTGCTGATCGGCAACATGGTCGATGCGATCCGCGCCGACACCGCGATCGGCAATGCCGAGAAGGAACTGCT
GCAAGTAGCCTCGGTCCCCTTGTACAAGATCCTCACCGTCCAGGCCGCCTATGGGCGCGGCATGCCGACCGATGATCGCG
ACACGCTCGCCGAGATCGCCAGCATCGACCTCCTCTATGCGATCCTCGACCGGATCGTGTCCGAAGCCGGGCGCTCGATG
GCAAGCTTCATCGCCGCCGACGAAGCCAAGCTCGCGATCTGGCGCGGCCAGGTCGCCGAGGTTCGCACTGGCCTCGTCCA
GCGGCAGGCGACCGGACAGGCCAAGGTCTCGGCGATCATGCAGATCATCGAGAAGACCGCGATGATCGAGAACGCGCTCG
CCGCCTCGATGTCGCCTTCGATGTCCGCCGCGCTCGACTGGTCGCGTGGACTGCAGTCGCGCTCGATCGTCCCCTGA

Upstream 100 bases:

>100_bases
GACAGCGTGACCAAGCGACCGATCCCGATCGGTTACGGCGTGCTCTCGGCCGACGAACTCCAGGACCGCATCTACCTCCT
CACCTCGAAGGAAGCCGGAC

Downstream 100 bases:

>100_bases
GGCGCGCATGGTCGAGATCTTCACCACCGGCGGCGGCGAGTACATCGTCAATGTCCTCAACGCCGTCGCCGCATGGACCG
GTGCGGGCGGCTACAAAAGC

Product: pilus assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTSIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCLNPTFEQMSLANAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIVP

Sequences:

>Translated_478_residues
MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTSIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCLNPTFEQMSLANAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIVP
>Mature_478_residues
MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLGNVWTRFPQKTTSIANLQLPR
ARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFSLAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVG
GLWPKGDLADKAICEAIGNSEGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD
RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETDLCLNPTFEQMSLANAKAIRP
RVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTVQAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSM
ASFIAADEAKLAIWRGQVAEVRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIVP

Specific function: Involved in pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010927 [H]

Pfam domain/function: PF06122 TraH [H]

EC number: NA

Molecular weight: Translated: 50636; Mature: 50636

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHH
NVWTRFPQKTTSIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS
HHHHHCCCHHCCHHHEECCCHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHHCCCCCCCHH
RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETD
HHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
LCLNPTFEQMSLANAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVAE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
VRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIVP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MITSIRNAALTLAAASMIASPLAANVGDSMDRFMDDMGAAANVTGPTAFEGQSAGYYSLG
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEHH
NVWTRFPQKTTSIANLQLPRARAGCGGIDIFAGSFSFINASEMVALLKAVANNAVGFAFS
HHHHHCCCHHCCHHHEECCCHHCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCHHHHH
LAIDTVCPECNKIMQEFSQKAQLMNNLSINSCEMAQGLVGGLWPKGDLADKAICEAIGNS
HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
EGIFTDYAAAKHGCGTRGQRASTNEGAGADYADVNPGVARNYTWHVLKKSAFFNPGGTFD
CCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHHCCCCCCCHH
RELAEYAMTLIGTVIYVPPKDDEAGKFVPFAGDASSTLVSALLDGTQGQTVRVFRCDETD
HHHHHHHHHHHCEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC
LCLNPTFEQMSLANAKAIRPRVALLIGNMVDAIRADTAIGNAEKELLQVASVPLYKILTV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHEE
QAAYGRGMPTDDRDTLAEIASIDLLYAILDRIVSEAGRSMASFIAADEAKLAIWRGQVAE
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHH
VRTGLVQRQATGQAKVSAIMQIIEKTAMIENALAASMSPSMSAALDWSRGLQSRSIVP
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1348105; 7915817; 2656408 [H]