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The map label for this gene is flgD [H]

Identifier: 85060037

GI number: 85060037

Start: 3556064

End: 3556480

Strand: Reverse

Name: flgD [H]

Synonym: SG2059

Alternate gene names: 85060037

Gene position: 3556480-3556064 (Counterclockwise)

Preceding gene: 85060038

Following gene: 85060029

Centisome position: 85.26

GC content: 56.83

Gene sequence:

>417_bases
ATGAGTTTAGCCGTGAATTTGAATGAAACCGCCTCCAGCGCCAGTGCCGCAAGCACGACGTCCAGCAGCGGTAGTGAAAG
CAGCGCGGATTTACAGAATAACTTTCTCACGCTGTTGGTGGCGCAGTTGCGTAATCAGGATCCCACCAATCCGCTGGATA
ACGCCGAATTGACAACCCAGCTGGCGCAGATCAGCATCCTGAGCAGCATCGAAAATCTCAATACCATGCTGGGATCGATC
TCCAGCCAGAACCTGCAGGCTACCACCCTGGTCGGACACGGCGTGATGGTCGACGGCAGCGGCGCCGTGTATTACTCGCG
CAACGGAGAATTTTCCCTTAACGCGGATCGACATGGTGGCGCTGACCATCCCCAGAAGGGCTGTCCGCCAGTGCTACTAC
CACCGGCTCGATGGTGA

Upstream 100 bases:

>100_bases
GTCCGCGTCGCGCAGCTATCAGGCCAATATTGAAGTATTGAATACCGCCAAGACCTTGATGCAAAAAACGCTGACGCTCG
GTCAGTAACGGGAGGCCAAA

Downstream 100 bases:

>100_bases
TGAGCCTGACCTCCAGCGCGACGTCCGTCGGCACGGCCACCTTTGATCCCGACGATAGCAGCACCTACAGTTTTTCCCAG
CCGTTGACGACCTATGACAT

Product: putative flagellar hook formation protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSLAVNLNETASSASAASTTSSSGSESSADLQNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI
SSQNLQATTLVGHGVMVDGSGAVYYSRNGEFSLNADRHGGADHPQKGCPPVLLPPARW

Sequences:

>Translated_138_residues
MSLAVNLNETASSASAASTTSSSGSESSADLQNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSI
SSQNLQATTLVGHGVMVDGSGAVYYSRNGEFSLNADRHGGADHPQKGCPPVLLPPARW
>Mature_137_residues
SLAVNLNETASSASAASTTSSSGSESSADLQNNFLTLLVAQLRNQDPTNPLDNAELTTQLAQISILSSIENLNTMLGSIS
SQNLQATTLVGHGVMVDGSGAVYYSRNGEFSLNADRHGGADHPQKGCPPVLLPPARW

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=105, Percent_Identity=56.1904761904762, Blast_Score=105, Evalue=9e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 14398; Mature: 14267

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAVNLNETASSASAASTTSSSGSESSADLQNNFLTLLVAQLRNQDPTNPLDNAELTTQ
CEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISILSSIENLNTMLGSISSQNLQATTLVGHGVMVDGSGAVYYSRNGEFSLNADRHGG
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCEEEEECCCCEEECCCCCCC
ADHPQKGCPPVLLPPARW
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLAVNLNETASSASAASTTSSSGSESSADLQNNFLTLLVAQLRNQDPTNPLDNAELTTQ
EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LAQISILSSIENLNTMLGSISSQNLQATTLVGHGVMVDGSGAVYYSRNGEFSLNADRHGG
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECCCCEEEEECCCCEEECCCCCCC
ADHPQKGCPPVLLPPARW
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]