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The map label for this gene is phnF [H]

Identifier: 85059833

GI number: 85059833

Start: 3166673

End: 3167248

Strand: Reverse

Name: phnF [H]

Synonym: SG1855

Alternate gene names: 85059833

Gene position: 3167248-3166673 (Counterclockwise)

Preceding gene: 85059837

Following gene: 85059832

Centisome position: 75.93

GC content: 56.08

Gene sequence:

>576_bases
ATGCACTTATCTAGACCTCCGACCACACGCTATCAGGCTATCGCCATTCAGCTTGAAAATGAATTACACCGCCATTACCG
CTGCGGCGAATACCTGCCTTCGGAAAAGCAGCTTGCCGAGTGTTTTGCCGTTAACCGGTACACGCTGCGCCGGGCTATCG
AGGAACTGGTCAATAAAGGCCTAGTCCAGCCTCGTCAGGGCGTCGGCATTTTGGTGTTGATGCGGCCGTTTAATTACCCT
TTGCACTCACAGGCGCATTTCAGCCAAAACCTGTTGGAGCAGGGTAGTCATCCGACCAGTGAGCGTCTTTTGGCCGTGCT
GCGCCCCTGTCACGCCGATGTGGCCGCCGCGCTGGCCTGCGAGGAGGGGGACAACGTTATCCATTTGCGTACGCTGTGTT
GCGTTAACGGCATCTCGGTGTGCGTCATAAACCATTATTTGTCCGATCTCAGCTGGTTGAAGCGCTGCAACGCTTCAACC
AAGGGTCGCTGCACGACTTCATTCGCCAGGAGATTGGCTATCCCCTCAGTCGTCATCAAACGCGTGTCAGCGCACGTCGG
GCGGATGCGCAGGTAA

Upstream 100 bases:

>100_bases
GCGTCGTCATAATCCCACCCCCACCCCATGCTGGGCTCAGTTTAGCGCGCCGGGGAAGTCACCGGCGTCCCTTGTCTACG
GCAGCGGGAATTTTTTTATG

Downstream 100 bases:

>100_bases
GTAAATTGCTAACCCTATCGCTGCAGTCGCCGCTGTTGTGCATACGCACTCTGAATACTTTATCCGGTAGCAACATAATG
GCGGAGTATTCCGTCAGCCT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MHLSRPPTTRYQAIAIQLENELHRHYRCGEYLPSEKQLAECFAVNRYTLRRAIEELVNKGLVQPRQGVGILVLMRPFNYP
LHSQAHFSQNLLEQGSHPTSERLLAVLRPCHADVAAALACEEGDNVIHLRTLCCVNGISVCVINHYLSDLSWLKRCNAST
KGRCTTSFARRLAIPSVVIKRVSAHVGRMRR

Sequences:

>Translated_191_residues
MHLSRPPTTRYQAIAIQLENELHRHYRCGEYLPSEKQLAECFAVNRYTLRRAIEELVNKGLVQPRQGVGILVLMRPFNYP
LHSQAHFSQNLLEQGSHPTSERLLAVLRPCHADVAAALACEEGDNVIHLRTLCCVNGISVCVINHYLSDLSWLKRCNAST
KGRCTTSFARRLAIPSVVIKRVSAHVGRMRR
>Mature_191_residues
MHLSRPPTTRYQAIAIQLENELHRHYRCGEYLPSEKQLAECFAVNRYTLRRAIEELVNKGLVQPRQGVGILVLMRPFNYP
LHSQAHFSQNLLEQGSHPTSERLLAVLRPCHADVAAALACEEGDNVIHLRTLCCVNGISVCVINHYLSDLSWLKRCNAST
KGRCTTSFARRLAIPSVVIKRVSAHVGRMRR

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known. By similarity could be a transcriptional regulator [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=166, Percent_Identity=64.4578313253012, Blast_Score=216, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 21621; Mature: 21621

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLSRPPTTRYQAIAIQLENELHRHYRCGEYLPSEKQLAECFAVNRYTLRRAIEELVNKG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LVQPRQGVGILVLMRPFNYPLHSQAHFSQNLLEQGSHPTSERLLAVLRPCHADVAAALAC
CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
EEGDNVIHLRTLCCVNGISVCVINHYLSDLSWLKRCNASTKGRCTTSFARRLAIPSVVIK
CCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RVSAHVGRMRR
HHHHHHHHCCC
>Mature Secondary Structure
MHLSRPPTTRYQAIAIQLENELHRHYRCGEYLPSEKQLAECFAVNRYTLRRAIEELVNKG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LVQPRQGVGILVLMRPFNYPLHSQAHFSQNLLEQGSHPTSERLLAVLRPCHADVAAALAC
CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
EEGDNVIHLRTLCCVNGISVCVINHYLSDLSWLKRCNASTKGRCTTSFARRLAIPSVVIK
CCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
RVSAHVGRMRR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]