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The map label for this gene is arnD

Identifier: 85059820

GI number: 85059820

Start: 3126714

End: 3127607

Strand: Reverse

Name: arnD

Synonym: SG1842

Alternate gene names: 85059820

Gene position: 3127607-3126714 (Counterclockwise)

Preceding gene: 85059821

Following gene: 85059819

Centisome position: 74.98

GC content: 61.63

Gene sequence:

>894_bases
ATGAAAAACGTCGGCCTGCGTATAGATGTCGATACCTGGCGCGGTACGCGCGACGGTATGCCGCGCCTGCTGGAATTGCT
GGCGGCGCAGCAGATCCAGGCGACGTTCTTTTTCAGCGTTGGGCCGGATAATATGGGGCGTCATTTGTGGCGCCTGGCAA
AACCGCAATTTTTGTTGAAGATGTTGCGCTCCCGCGCCGCTTCGCTTTACGGCTGGGATATCCTGCTGGCCGGCACCGCC
TGGCCGGGTAGAAAAATCGGCCAGGGGCTGGCGGCGCAGATCCGCGCCGCTGCAGCCGACCATGAAGTCGGGCTGCACGC
CTGGGATCATTTTGCCTGGCAAACCTGGGCTGGCGTATGGAGCGAGCGGCAATTGACGGAACAGATTCGACTGGCGCGGG
ATGCGCTGACCGCCATTATCGAGCGGCCGGTGACCTGTTCAGCGGTCGCAGGCTGGCGTGCGGACGATCGCGTGGTGCAG
GCCAAGCAGCCCTTTGACTTTCACTACAACAGCGACTGTCGCGGCACGGAGCCGTTTCGGCCGTTGCTGGCCAACGGCGC
GTTTGGCGCGGTGCAGATCCCGGTGACGCAGCCTACCTTTGACGAGGCCATCGGGCAGACGACTACCCGTGCCGGCTACA
ACCATTTCATTCTCGACAGCATCAAGGCCGATCGCGGGACGCCGGTTTACACCATTCACGCCGAGGTTGAAGGGATTGCG
CTAAGCGGAATGTTTCAGGAACTGTTGTCGATGGCGGTGGCGGAAGGAATCCGCTTTTGTCCGCTGCGAGAGCTTCTCCC
CCAGGATACTGCAGCACTCCCGGTCGGTCAGGTGGTGCGCGGCGAGATTCCGGGACGAGAAGGGTGGGTTGGATGTCAGC
GCTTGTTAAAGTGA

Upstream 100 bases:

>100_bases
AACGCTTGCTGGGCTGGGCTCCTTCGGTGCCCATGGCTCAGACCATTGACGAAACGCTGGACTTTTTCCTGCAAACCGTC
GATTTGCCGGACGCGGCGCA

Downstream 100 bases:

>100_bases
GTCGATAATGAAATCCCTTAAACCCGGTATCGGGCTGATGTGCATTATTGCCCTATATTATCTTTTGCCGCTGTCGTTTC
GCAGCCTGTGGCAGCCGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKNVGLRIDVDTWRGTRDGMPRLLELLAAQQIQATFFFSVGPDNMGRHLWRLAKPQFLLKMLRSRAASLYGWDILLAGTA
WPGRKIGQGLAAQIRAAAADHEVGLHAWDHFAWQTWAGVWSERQLTEQIRLARDALTAIIERPVTCSAVAGWRADDRVVQ
AKQPFDFHYNSDCRGTEPFRPLLANGAFGAVQIPVTQPTFDEAIGQTTTRAGYNHFILDSIKADRGTPVYTIHAEVEGIA
LSGMFQELLSMAVAEGIRFCPLRELLPQDTAALPVGQVVRGEIPGREGWVGCQRLLK

Sequences:

>Translated_297_residues
MKNVGLRIDVDTWRGTRDGMPRLLELLAAQQIQATFFFSVGPDNMGRHLWRLAKPQFLLKMLRSRAASLYGWDILLAGTA
WPGRKIGQGLAAQIRAAAADHEVGLHAWDHFAWQTWAGVWSERQLTEQIRLARDALTAIIERPVTCSAVAGWRADDRVVQ
AKQPFDFHYNSDCRGTEPFRPLLANGAFGAVQIPVTQPTFDEAIGQTTTRAGYNHFILDSIKADRGTPVYTIHAEVEGIA
LSGMFQELLSMAVAEGIRFCPLRELLPQDTAALPVGQVVRGEIPGREGWVGCQRLLK
>Mature_297_residues
MKNVGLRIDVDTWRGTRDGMPRLLELLAAQQIQATFFFSVGPDNMGRHLWRLAKPQFLLKMLRSRAASLYGWDILLAGTA
WPGRKIGQGLAAQIRAAAADHEVGLHAWDHFAWQTWAGVWSERQLTEQIRLARDALTAIIERPVTCSAVAGWRADDRVVQ
AKQPFDFHYNSDCRGTEPFRPLLANGAFGAVQIPVTQPTFDEAIGQTTTRAGYNHFILDSIKADRGTPVYTIHAEVEGIA
LSGMFQELLSMAVAEGIRFCPLRELLPQDTAALPVGQVVRGEIPGREGWVGCQRLLK

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily

Homologues:

Organism=Escherichia coli, GI1788590, Length=295, Percent_Identity=62.3728813559322, Blast_Score=376, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARND_SODGM (Q2NRV8)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455522.1
- ProteinModelPortal:   Q2NRV8
- STRING:   Q2NRV8
- GeneID:   3868635
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG1842
- NMPDR:   fig|343509.6.peg.3896
- eggNOG:   COG0726
- HOGENOM:   HBG298639
- OMA:   CSAVAGW
- PhylomeDB:   Q2NRV8
- ProtClustDB:   PRK15394
- BioCyc:   SGLO343509:SG1842-MONOMER
- HAMAP:   MF_01870
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 32982; Mature: 32982

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVGLRIDVDTWRGTRDGMPRLLELLAAQQIQATFFFSVGPDNMGRHLWRLAKPQFLLK
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHCCHHHHHH
MLRSRAASLYGWDILLAGTAWPGRKIGQGLAAQIRAAAADHEVGLHAWDHFAWQTWAGVW
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
SERQLTEQIRLARDALTAIIERPVTCSAVAGWRADDRVVQAKQPFDFHYNSDCRGTEPFR
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCH
PLLANGAFGAVQIPVTQPTFDEAIGQTTTRAGYNHFILDSIKADRGTPVYTIHAEVEGIA
HHHHCCCCCEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCEE
LSGMFQELLSMAVAEGIRFCPLRELLPQDTAALPVGQVVRGEIPGREGWVGCQRLLK
HHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MKNVGLRIDVDTWRGTRDGMPRLLELLAAQQIQATFFFSVGPDNMGRHLWRLAKPQFLLK
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHCCHHHHHH
MLRSRAASLYGWDILLAGTAWPGRKIGQGLAAQIRAAAADHEVGLHAWDHFAWQTWAGVW
HHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
SERQLTEQIRLARDALTAIIERPVTCSAVAGWRADDRVVQAKQPFDFHYNSDCRGTEPFR
HHHHHHHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCH
PLLANGAFGAVQIPVTQPTFDEAIGQTTTRAGYNHFILDSIKADRGTPVYTIHAEVEGIA
HHHHCCCCCEEEEECCCCCHHHHHCCHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCEE
LSGMFQELLSMAVAEGIRFCPLRELLPQDTAALPVGQVVRGEIPGREGWVGCQRLLK
HHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA