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The map label for this gene is rodZ [H]

Identifier: 85059739

GI number: 85059739

Start: 3016510

End: 3017469

Strand: Reverse

Name: rodZ [H]

Synonym: SG1761

Alternate gene names: 85059739

Gene position: 3017469-3016510 (Counterclockwise)

Preceding gene: 85059740

Following gene: 85059738

Centisome position: 72.34

GC content: 62.08

Gene sequence:

>960_bases
ATGAATACTGAAGCCCTGCAAGATCAAGCACCAACCACGACGGGCGGACGCCTGCGTCAAGCCCGCGAAAATATGGGATT
AAGCCAGCAGGCGGTGGCCGAGCGGCTGTGCCTGAAGGTCTCCACCGTGCGGGATATCGAAGACGATCACGTCAATCCCA
ACCTCTCCTCAACGTTCCTACGCGGCTATATTCGCTCTTATGCGCGCCTGGTGGATATTTCTGAAGAAGAACTGACGCCG
ATGATGGCCAAACAGGTGCCGATAAAGGCCTCGAAGGTAGCGCCGATGCAGAGCTTCTCGCTGGGCAAAACCCGCAAGAA
ACGCGATGGCTGGCTGATGGGGTCCACCTGGCTTATCCTGTTTGTGGTGATTGGTCTGACGGGCGCCTGGTGGTGGCAAA
ATCATCAGGCCCAGCAGCAGGATATCGCCAACATGGCCGATCAATCCTCCGCCCAGTTATCGCGTGGGGATGATGCCACG
TTGGTCCCGTTTGGCGACGGCGCGGACGACGTCGGTCAGCCGCCGGCGGATCAACCGGCCGACGCGGATGCCGGTGTGCC
GGCTGCGGCGCCGTCTTCATCACCCGCAAGCGCGGCGCCCGCCCCGGATATCGCCGGCCAGACCGCCGGCCGCACGTTGC
CAGTGCCGGCGACGGTTAGCCCCTCCGCGCCGACAACGTCCGCCGCACCGGAGACCGGCGCCGCTGATGCCGACGGCAAC
GCGCTGGTGATGAATTTTACCGGCGACTGTTGGCTGGAGGTGTTCGATGCTGGCGGCAAGAAACTGTTCAGCGGTATTCA
GCATAGCGGCGCCAGGCTGAATCTCACCGGCCAGGCACCGTACAAATTAAAAATCGGCGCCCCTGCCGCAGTGCAGGTTC
ATTACCAGGGCAAGCCGGTGGATCTGAGCCGGTTCATCCGGTCAAATCAGGTTGCGCGACTGACCGTAGCCGCCCAGTAA

Upstream 100 bases:

>100_bases
TTCGCTGCGTTAGCCAACCGGCCGAATGACGTGTAACGTTATGGCACGCGGCTTGCGCGAAGTTTTCCATAATCCGAACA
GTACCAGCAATTCCTAGCTA

Downstream 100 bases:

>100_bases
AGAGTTAAGCCAGTCGGCAAGGTTGGAGAAAGTTCAATGCATAATTCCGCACCCATAACCCGTCGAAAATCGAAACGTAT
TTACGTCGGCAAGGTGCTGG

Product: cytoskeletal protein RodZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNTEALQDQAPTTTGGRLRQARENMGLSQQAVAERLCLKVSTVRDIEDDHVNPNLSSTFLRGYIRSYARLVDISEEELTP
MMAKQVPIKASKVAPMQSFSLGKTRKKRDGWLMGSTWLILFVVIGLTGAWWWQNHQAQQQDIANMADQSSAQLSRGDDAT
LVPFGDGADDVGQPPADQPADADAGVPAAAPSSSPASAAPAPDIAGQTAGRTLPVPATVSPSAPTTSAAPETGAADADGN
ALVMNFTGDCWLEVFDAGGKKLFSGIQHSGARLNLTGQAPYKLKIGAPAAVQVHYQGKPVDLSRFIRSNQVARLTVAAQ

Sequences:

>Translated_319_residues
MNTEALQDQAPTTTGGRLRQARENMGLSQQAVAERLCLKVSTVRDIEDDHVNPNLSSTFLRGYIRSYARLVDISEEELTP
MMAKQVPIKASKVAPMQSFSLGKTRKKRDGWLMGSTWLILFVVIGLTGAWWWQNHQAQQQDIANMADQSSAQLSRGDDAT
LVPFGDGADDVGQPPADQPADADAGVPAAAPSSSPASAAPAPDIAGQTAGRTLPVPATVSPSAPTTSAAPETGAADADGN
ALVMNFTGDCWLEVFDAGGKKLFSGIQHSGARLNLTGQAPYKLKIGAPAAVQVHYQGKPVDLSRFIRSNQVARLTVAAQ
>Mature_319_residues
MNTEALQDQAPTTTGGRLRQARENMGLSQQAVAERLCLKVSTVRDIEDDHVNPNLSSTFLRGYIRSYARLVDISEEELTP
MMAKQVPIKASKVAPMQSFSLGKTRKKRDGWLMGSTWLILFVVIGLTGAWWWQNHQAQQQDIANMADQSSAQLSRGDDAT
LVPFGDGADDVGQPPADQPADADAGVPAAAPSSSPASAAPAPDIAGQTAGRTLPVPATVSPSAPTTSAAPETGAADADGN
ALVMNFTGDCWLEVFDAGGKKLFSGIQHSGARLNLTGQAPYKLKIGAPAAVQVHYQGKPVDLSRFIRSNQVARLTVAAQ

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=337, Percent_Identity=60.2373887240356, Blast_Score=370, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 33746; Mature: 33746

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEALQDQAPTTTGGRLRQARENMGLSQQAVAERLCLKVSTVRDIEDDHVNPNLSSTFL
CCCHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
RGYIRSYARLVDISEEELTPMMAKQVPIKASKVAPMQSFSLGKTRKKRDGWLMGSTWLIL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHCCCCCCCHHCCCEEECHHHHHH
FVVIGLTGAWWWQNHQAQQQDIANMADQSSAQLSRGDDATLVPFGDGADDVGQPPADQPA
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCCCCCCCC
DADAGVPAAAPSSSPASAAPAPDIAGQTAGRTLPVPATVSPSAPTTSAAPETGAADADGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
ALVMNFTGDCWLEVFDAGGKKLFSGIQHSGARLNLTGQAPYKLKIGAPAAVQVHYQGKPV
EEEEEECCCEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCEEEEEEECCCCC
DLSRFIRSNQVARLTVAAQ
HHHHHHHCCCEEEEEEECC
>Mature Secondary Structure
MNTEALQDQAPTTTGGRLRQARENMGLSQQAVAERLCLKVSTVRDIEDDHVNPNLSSTFL
CCCHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
RGYIRSYARLVDISEEELTPMMAKQVPIKASKVAPMQSFSLGKTRKKRDGWLMGSTWLIL
HHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHCCCCHHCCCCCCCHHCCCEEECHHHHHH
FVVIGLTGAWWWQNHQAQQQDIANMADQSSAQLSRGDDATLVPFGDGADDVGQPPADQPA
HHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHCCCCCCCCCC
DADAGVPAAAPSSSPASAAPAPDIAGQTAGRTLPVPATVSPSAPTTSAAPETGAADADGN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
ALVMNFTGDCWLEVFDAGGKKLFSGIQHSGARLNLTGQAPYKLKIGAPAAVQVHYQGKPV
EEEEEECCCEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCEEEEEEECCCCC
DLSRFIRSNQVARLTVAAQ
HHHHHHHCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA