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The map label for this gene is ompF [H]

Identifier: 85059556

GI number: 85059556

Start: 2705124

End: 2706257

Strand: Reverse

Name: ompF [H]

Synonym: SG1578

Alternate gene names: 85059556

Gene position: 2706257-2705124 (Counterclockwise)

Preceding gene: 85059559

Following gene: 85059555

Centisome position: 64.88

GC content: 51.06

Gene sequence:

>1134_bases
ATGAAACTACAGTATCTGTCTGTGCTCGCTTCGGCTATGGTAATGGCAGGTAGCGCTGGGGCAGCCGAAGTTTATAATAA
AGACGGCAATAAACTGGATCTGTTCGGTAAACTCAACGGCATGCGCTATATGTCTAGTGATGATGCTAAAAACGGCGATC
GTTCTTTCATTCATTATGGCTTCAACGGGGAAGCCCAGCTTAGCGAAGGTATTACCGGTTTCGGTACCTGGGAGCAAGAA
GTCGGACTGAGCCACGCCGAAAGCGGAGGCGCGAAAAGCAACTTCACCCGCCTGGGTTTCGCCGGTATCAAATTCGCCGA
TGCGGGCAGCATTGACTATGGCCGTAACTACGGCGTGCTGTATGACGTCGGCGCCTGGACCGATATGATGCCGGAATTCG
GTGCTGATACCACCGTAACCGACAATTTCATGACCGGGCGTGCCAATGGCGTGTTCACCTATCGCAATACCAATTTTTTC
GGAATGGTCGACGGCCTGAACTTTGCGCTGCAGTATCAGGGCAAAAACGACACCAAGGAGGATGAGAAAGGTAGGCGTGG
CTTAAAAGGTGGGCGTGGCTTAAATGAGGCGAACGGTGATGGCTACGGACTGTCCGTAACTTATGATTTGGGGAACGGTG
TTTCCGCCGGTGCCGCCTATACCAGCAGTAATCGCACCTTGGGGCAGCGTATGTTGAACAGCGCGCGTAATAATAAGGAT
AAAAGGGCTGAAGCTTACTCTTTGGGTCTGAAATATGACGCTAACAACCTCTATCTGGCGGCGCTGTACAGCGAAACTCG
CAACATGACGCCCTACGGCGATTTCTCGGGCAACAAGGCGAAACACGGTTTTGCTGACAAGGCGCACAATCTTGAATTGG
TCGCGCAATACGCGCTTGATTTCGGCCTGCGCCCCTCGGTCGGCTATCTGCAATCGCGGATTGACGGCGATTATCAGGGC
AAAAGCCAAACCATCAAGAAATACATCGAAGTGGGCGCCAGCTATAACTTTAACAAGAATATGCTGGCCTTCATTGACTA
TCGCATCAATCTGCTGTCCAAAAACGACTTCACCCGTGACACGCAGATATCTACTGACAATATTTTAGCAATGGGCATGA
CGTACATGTTCTGA

Upstream 100 bases:

>100_bases
ATCAGTGACATCAAGATCTGTTGAATGCTCGTTTTTATTTGGGCCTTTGCGGATATCAAATTATTAGTGGCGAAATATAA
TAAACATAGAGGGTATTAAC

Downstream 100 bases:

>100_bases
TGCGTCTGTTGATGTAGAGAATAAGGTGTTAAGAAACGGGGCGTACGGTGTGACAGTCAGCCCCGTTGTTTGGTAAGAGA
TACAGTCCTTCGCCTTATGC

Product: outer membrane protein

Products: NA

Alternate protein names: Porin ompF [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKLQYLSVLASAMVMAGSAGAAEVYNKDGNKLDLFGKLNGMRYMSSDDAKNGDRSFIHYGFNGEAQLSEGITGFGTWEQE
VGLSHAESGGAKSNFTRLGFAGIKFADAGSIDYGRNYGVLYDVGAWTDMMPEFGADTTVTDNFMTGRANGVFTYRNTNFF
GMVDGLNFALQYQGKNDTKEDEKGRRGLKGGRGLNEANGDGYGLSVTYDLGNGVSAGAAYTSSNRTLGQRMLNSARNNKD
KRAEAYSLGLKYDANNLYLAALYSETRNMTPYGDFSGNKAKHGFADKAHNLELVAQYALDFGLRPSVGYLQSRIDGDYQG
KSQTIKKYIEVGASYNFNKNMLAFIDYRINLLSKNDFTRDTQISTDNILAMGMTYMF

Sequences:

>Translated_377_residues
MKLQYLSVLASAMVMAGSAGAAEVYNKDGNKLDLFGKLNGMRYMSSDDAKNGDRSFIHYGFNGEAQLSEGITGFGTWEQE
VGLSHAESGGAKSNFTRLGFAGIKFADAGSIDYGRNYGVLYDVGAWTDMMPEFGADTTVTDNFMTGRANGVFTYRNTNFF
GMVDGLNFALQYQGKNDTKEDEKGRRGLKGGRGLNEANGDGYGLSVTYDLGNGVSAGAAYTSSNRTLGQRMLNSARNNKD
KRAEAYSLGLKYDANNLYLAALYSETRNMTPYGDFSGNKAKHGFADKAHNLELVAQYALDFGLRPSVGYLQSRIDGDYQG
KSQTIKKYIEVGASYNFNKNMLAFIDYRINLLSKNDFTRDTQISTDNILAMGMTYMF
>Mature_377_residues
MKLQYLSVLASAMVMAGSAGAAEVYNKDGNKLDLFGKLNGMRYMSSDDAKNGDRSFIHYGFNGEAQLSEGITGFGTWEQE
VGLSHAESGGAKSNFTRLGFAGIKFADAGSIDYGRNYGVLYDVGAWTDMMPEFGADTTVTDNFMTGRANGVFTYRNTNFF
GMVDGLNFALQYQGKNDTKEDEKGRRGLKGGRGLNEANGDGYGLSVTYDLGNGVSAGAAYTSSNRTLGQRMLNSARNNKD
KRAEAYSLGLKYDANNLYLAALYSETRNMTPYGDFSGNKAKHGFADKAHNLELVAQYALDFGLRPSVGYLQSRIDGDYQG
KSQTIKKYIEVGASYNFNKNMLAFIDYRINLLSKNDFTRDTQISTDNILAMGMTYMF

Specific function: OmpF is a porin that forms passive diffusion pores which allow small molecular weight hydrophilic materials across the outer membrane. It is also a receptor for the bacteriophage T2 [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=366, Percent_Identity=53.551912568306, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1788544, Length=381, Percent_Identity=51.9685039370079, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1786436, Length=380, Percent_Identity=50.7894736842105, Blast_Score=352, Evalue=3e-98,
Organism=Escherichia coli, GI1787160, Length=384, Percent_Identity=45.8333333333333, Blast_Score=306, Evalue=2e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41331; Mature: 41331

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00878 ODR_DC_2_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLQYLSVLASAMVMAGSAGAAEVYNKDGNKLDLFGKLNGMRYMSSDDAKNGDRSFIHYG
CCHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FNGEAQLSEGITGFGTWEQEVGLSHAESGGAKSNFTRLGFAGIKFADAGSIDYGRNYGVL
CCCCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCEE
YDVGAWTDMMPEFGADTTVTDNFMTGRANGVFTYRNTNFFGMVDGLNFALQYQGKNDTKE
EECCCCHHHCHHHCCCCEEECCCEECCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCH
DEKGRRGLKGGRGLNEANGDGYGLSVTYDLGNGVSAGAAYTSSNRTLGQRMLNSARNNKD
HHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCH
KRAEAYSLGLKYDANNLYLAALYSETRNMTPYGDFSGNKAKHGFADKAHNLELVAQYALD
HHHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FGLRPSVGYLQSRIDGDYQGKSQTIKKYIEVGASYNFNKNMLAFIDYRINLLSKNDFTRD
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCC
TQISTDNILAMGMTYMF
CCCCCCCEEEHHHHHCC
>Mature Secondary Structure
MKLQYLSVLASAMVMAGSAGAAEVYNKDGNKLDLFGKLNGMRYMSSDDAKNGDRSFIHYG
CCHHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEEECCCEEEECCCCCCCCCCCEEEEC
FNGEAQLSEGITGFGTWEQEVGLSHAESGGAKSNFTRLGFAGIKFADAGSIDYGRNYGVL
CCCCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCCEE
YDVGAWTDMMPEFGADTTVTDNFMTGRANGVFTYRNTNFFGMVDGLNFALQYQGKNDTKE
EECCCCHHHCHHHCCCCEEECCCEECCCCEEEEEECCCEEEEECCCEEEEEECCCCCCCH
DEKGRRGLKGGRGLNEANGDGYGLSVTYDLGNGVSAGAAYTSSNRTLGQRMLNSARNNKD
HHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCH
KRAEAYSLGLKYDANNLYLAALYSETRNMTPYGDFSGNKAKHGFADKAHNLELVAQYALD
HHHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FGLRPSVGYLQSRIDGDYQGKSQTIKKYIEVGASYNFNKNMLAFIDYRINLLSKNDFTRD
CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEECCCCCCCC
TQISTDNILAMGMTYMF
CCCCCCCEEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274033 [H]