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The map label for this gene is ndpA [C]

Identifier: 85059552

GI number: 85059552

Start: 2689556

End: 2690560

Strand: Reverse

Name: ndpA [C]

Synonym: SG1574

Alternate gene names: 85059552

Gene position: 2690560-2689556 (Counterclockwise)

Preceding gene: 85059555

Following gene: 85059551

Centisome position: 64.5

GC content: 55.92

Gene sequence:

>1005_bases
ATGAGTCTGGATATCGACCAGATTGCTCTGCATCAAATGATTAAGCTCGATGAACAGACGCTAGAGCTGGTGCTGCGTGA
TACGCCTCTTGATGTCTCGCCGGCGGTGGAAGATATGATGGCCGAGCTGCACCGCGTATACAGTGCCAAGAGCAAGGCCT
ACGGCATTTTCACGCCCGAGAGTGAACTGGCGGACGCGGTACGCAGTTGCCGCCGGGGAAATGAAAACTTTCTTGCCTTC
AGCCGCACCGCGACGGGGCGACTGCGCGATGAGCTGGCGAAATATCCGTTTGCCGAAGGCGGAACTGTCCTGTTTTGCCA
GTATCGTTACCTGGCGGTAGAATATTTGCTCATCGCGGTGCTCGGTACCTGTCAGAGTATGCTGGTCAATGAACAGCTGG
ATATCAGCAGTACCCAGTACCTGGATATACACCACGCGGATATTGTGGCGTGCATCGATTTGACCGAATGGGAAACCCAG
CCGGCTTCCACGCGTTATCTGACGTTTCTGAAAGGGCGCGTAGGACGGAAAGTCTCGGATTTCTTTATGGACTTTCTCGC
AGCAGCCGAAGGGTTGGACACCAAGGCGCAAAACCGCGGCCTGCTGCAGGCGGTGGATGATTACTGCACCGATGCAGCGC
TGGATAATCGCCAACGGCAAGAGGTTCGCCAGCAGGTACACAGCTACTGCAAAGAGCAATTGCAGGCCGGCGAGGATATT
GCGCTGGTGGAACTTTCCGCCACTCTGGCGCCGGTGAGTGACAAAACTTTCCAGGCCTTCTCAAGCGAACAGGGCTATGC
GCTGGAGGAAACGTTCCCAGCCGATCGCGGCACGCTGCTCCAGCTCACCAAATACGCCGGCAGCGGCGGAGGGGTAACGC
TTAATTTTGATGCGCATTTGCTGGGCGAACGCATTTTCTGGGATCCCGCGACGGACACGTTGACGATTAAAGGAACGCCG
CCGAATCTGCGCGATCAATTAACCCGTCGTCAGAACGGCAAATAA

Upstream 100 bases:

>100_bases
TTGTAGCGTTTCAGCCTTCGGTCATGGCGGAGGCGACACAGTTGCAGCGGCGGGCGATTCGGTGTTTGAATACGCACCTG
ACCAGAATGGAGAATAGAAC

Downstream 100 bases:

>100_bases
CGCTCACAATACCTTAAATCACCGTTGACTATAGTACGGTGGTTTAAGGTGACGGCGCCCGCTAGCGTCCAGATAATTAA
TACATCAATCATTGGCCTGA

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSLDIDQIALHQMIKLDEQTLELVLRDTPLDVSPAVEDMMAELHRVYSAKSKAYGIFTPESELADAVRSCRRGNENFLAF
SRTATGRLRDELAKYPFAEGGTVLFCQYRYLAVEYLLIAVLGTCQSMLVNEQLDISSTQYLDIHHADIVACIDLTEWETQ
PASTRYLTFLKGRVGRKVSDFFMDFLAAAEGLDTKAQNRGLLQAVDDYCTDAALDNRQRQEVRQQVHSYCKEQLQAGEDI
ALVELSATLAPVSDKTFQAFSSEQGYALEETFPADRGTLLQLTKYAGSGGGVTLNFDAHLLGERIFWDPATDTLTIKGTP
PNLRDQLTRRQNGK

Sequences:

>Translated_334_residues
MSLDIDQIALHQMIKLDEQTLELVLRDTPLDVSPAVEDMMAELHRVYSAKSKAYGIFTPESELADAVRSCRRGNENFLAF
SRTATGRLRDELAKYPFAEGGTVLFCQYRYLAVEYLLIAVLGTCQSMLVNEQLDISSTQYLDIHHADIVACIDLTEWETQ
PASTRYLTFLKGRVGRKVSDFFMDFLAAAEGLDTKAQNRGLLQAVDDYCTDAALDNRQRQEVRQQVHSYCKEQLQAGEDI
ALVELSATLAPVSDKTFQAFSSEQGYALEETFPADRGTLLQLTKYAGSGGGVTLNFDAHLLGERIFWDPATDTLTIKGTP
PNLRDQLTRRQNGK
>Mature_333_residues
SLDIDQIALHQMIKLDEQTLELVLRDTPLDVSPAVEDMMAELHRVYSAKSKAYGIFTPESELADAVRSCRRGNENFLAFS
RTATGRLRDELAKYPFAEGGTVLFCQYRYLAVEYLLIAVLGTCQSMLVNEQLDISSTQYLDIHHADIVACIDLTEWETQP
ASTRYLTFLKGRVGRKVSDFFMDFLAAAEGLDTKAQNRGLLQAVDDYCTDAALDNRQRQEVRQQVHSYCKEQLQAGEDIA
LVELSATLAPVSDKTFQAFSSEQGYALEETFPADRGTLLQLTKYAGSGGGVTLNFDAHLLGERIFWDPATDTLTIKGTPP
NLRDQLTRRQNGK

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=333, Percent_Identity=74.1741741741742, Blast_Score=511, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_SODGM (Q2NSM6)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455254.1
- STRING:   Q2NSM6
- GeneID:   3866687
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG1574
- NMPDR:   fig|343509.6.peg.3344
- eggNOG:   COG3081
- HOGENOM:   HBG296787
- OMA:   TDYLFIA
- PhylomeDB:   Q2NSM6
- ProtClustDB:   PRK00378
- BioCyc:   SGLO343509:SG1574-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 37341; Mature: 37209

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDIDQIALHQMIKLDEQTLELVLRDTPLDVSPAVEDMMAELHRVYSAKSKAYGIFTPE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
SELADAVRSCRRGNENFLAFSRTATGRLRDELAKYPFAEGGTVLFCQYRYLAVEYLLIAV
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LGTCQSMLVNEQLDISSTQYLDIHHADIVACIDLTEWETQPASTRYLTFLKGRVGRKVSD
HHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECHHCCCCCCCHHHHHHHHHHHCCHHHH
FFMDFLAAAEGLDTKAQNRGLLQAVDDYCTDAALDNRQRQEVRQQVHSYCKEQLQAGEDI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE
ALVELSATLAPVSDKTFQAFSSEQGYALEETFPADRGTLLQLTKYAGSGGGVTLNFDAHL
EEEEEECHHCCCCCHHHHHHCCCCCCEEHHCCCCCCCHHEEHHHHCCCCCCEEEEECHHH
LGERIFWDPATDTLTIKGTPPNLRDQLTRRQNGK
HCCEEEECCCCCEEEEECCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SLDIDQIALHQMIKLDEQTLELVLRDTPLDVSPAVEDMMAELHRVYSAKSKAYGIFTPE
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCH
SELADAVRSCRRGNENFLAFSRTATGRLRDELAKYPFAEGGTVLFCQYRYLAVEYLLIAV
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHH
LGTCQSMLVNEQLDISSTQYLDIHHADIVACIDLTEWETQPASTRYLTFLKGRVGRKVSD
HHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECHHCCCCCCCHHHHHHHHHHHCCHHHH
FFMDFLAAAEGLDTKAQNRGLLQAVDDYCTDAALDNRQRQEVRQQVHSYCKEQLQAGEDI
HHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE
ALVELSATLAPVSDKTFQAFSSEQGYALEETFPADRGTLLQLTKYAGSGGGVTLNFDAHL
EEEEEECHHCCCCCHHHHHHCCCCCCEEHHCCCCCCCHHEEHHHHCCCCCCEEEEECHHH
LGERIFWDPATDTLTIKGTPPNLRDQLTRRQNGK
HCCEEEECCCCCEEEEECCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA