Click here to switch to the map view.

The map label for this gene is rnfC [H]

Identifier: 85059431

GI number: 85059431

Start: 2426691

End: 2428682

Strand: Reverse

Name: rnfC [H]

Synonym: SG1453

Alternate gene names: 85059431

Gene position: 2428682-2426691 (Counterclockwise)

Preceding gene: 85059432

Following gene: 85059430

Centisome position: 58.23

GC content: 61.9

Gene sequence:

>1992_bases
ATGTTTAATTTATTGTCTGCCCTGCGAAAACAGCGACTATGGGATTTTCCGGGCGGTATCCATCCCCCCGAGATGAAAAG
CCAGTCCAGCAATGTCCCTCTGCGGTCCGTGCCTCTGCCTGACAAGCTGATAATTCCCTTGAAGCAGCATTTGGGCCCCG
AAGGGGAGTTGCGGGTGGCACCCGGCGATAACGTGCTGCGCGGTCAGCCCTTGACCGCCGGTAGCGGCCGGACTTTGCCG
GTGCATGCCCCCACCTCCGGCACGATAGCGGCAATCACGCCGCACCGCACCGCGCATCCGTCGGGCCTGGCGGAGCTTTG
CGTCATTTTGCTGCCCGACGGCAAGGACCAATGGGTTGCGCTTAAGCCGCTGGTGGATTTTCAGCACTCTTCGTCGGCGC
AGCTGCTGAGCCGTATTCATGAAAGCGGGATCGCCGGTCTGGGCGGCGCGGGTTTTCCCACCGCAGCCAAACTCGGCGGC
GGCGAGCATGGGGTGGAGACGCTCATCATCAACGGCGCCGAGTGTGAGCCCTATATCACCGCCGACGATCGGTTGATGCG
GGAACATGCACGTGACATTGTCACAGGTATGGCGATATTGCATCATATGCTGCGACCCCGGCGCCTGCTGCTGGGCATTG
AAGATAATAAACCCGCGGCTATCGCCGTCTTAAAGGACGCGCTGTGCGAGCATCCAACAGGAGAGCTGCGCGTCATTCCC
ACCAAATACCCCTCCGGCGGCGCGAAACAACTCACCAAAATATTAACCGGCAAAGAGGTCCCCGTGGGTCAACATTCCGC
CGCCATTGGCGTGGTAATGTTGAATGTGGGCACCGTCTATGCCATCAAGCGCGCCGTTGTTGACGGAGAAGCGCTGACCG
AGCGTGTAGTAACGCTTACGGGCGAGGCGCTGGCGCGGCCGGGCAATGTCTGGGCGCGCCTCGGCACCCCCGTAAGCCAC
CTGCTCGCCCATGCCGGTTTCATGCCCGCCGCGGAGCCAACAGTCATTATGGGCGGTCCGCTAATGGGCTTCACGCTGCC
TGCGCTGGACGTGCCGGTAGTCAAAATCAGCAACTGCCTGTTAGCGCCGTCCGTGCAGGAACTTGCGCCGGCGGAGCCGG
AGCAAAGCTGTATTCGGTGCAGCCGTTGTGCGGATGCCTGTCCGGCCAGCCTGCTGCCGCAGCAACTTTATTGGTTTAGC
CGCGGACAAGAGCACGATAAAGCCCGCCAGCATCACTTGTTCGACTGTATCGAATGTGGCGCCTGTGCCTATGTCTGCCC
TAGCAATATCCCGCTGGTGCACTATTATCGCCAGCAGAAAGCGGAAATTCGCGCGCTGGATGACGACGCGCGGCGTGCGG
CGATGGCGAAGGCGCGTTATGAAGCCAAACTGGCGCGGCGCGAGCGGGAAAAACAGCAACGGCTTGCCCACCATCAGCAG
GCAGCGGTAAAACTCGATGACGCCGCAGCGGCGGCTACTTCACTCCCCGACAACACTGCTTCGATGGCCTCTTCCCCCCA
GGCTGCCGTTGCCGCCGCCATCGCGCGAGTGAAAGCCCGGCGTCAGGCCGTTCAGGAAGCAGCCGGGCACCCATCGCAGG
CAACCCCGGCGTCGCCAAGCGTTGGCGTGCGGGAAGAAAGTGACAATGTCACTAATGCGGCTACCAGTCCCATAGCGTCT
GATGGCACGCTTACCCCGGCGCCAGACAATCTGGGCACCGAGGCATCGAGGACTGTTTCGCCTGTCGCGTCCGGGAACCG
CGATATGAACGATATCGGTCCGCGCAAGGCCGCGCAGGAAAGTACGGTTCTCATAGACCGGGTTGATGCCGCGCCAGACT
GCGATGAGAATGCCGCTTCAGGTGACAACGTCATCACCTTAGTAACGACCACGCCTCGGCCTGAGGGCAACGCCGCAGGG
GGCCAGCGCCGCGATCACCGCCCGGCAGAAGGCGGAACAGAGCCTTCCCGCCGCGACCACAATTTCGTCTGA

Upstream 100 bases:

>100_bases
CCTACCAACTGTATTGAAATGCGCCCGCTTGCCATCACCCCCACCAGCTGGAAGTGGGATCTGCGTACCATACCTATTAC
GGTCATCCAGCAGGAGCAAC

Downstream 100 bases:

>100_bases
AGAGGACTAAATGGCGTTTAGAATTGCAAGTTCTCCCTTCACCCATAACCGGCAAACCACCCGGCAAATCATGATTCAGG
TCATGCTAGCTTGTCTGCCG

Product: putative iron-sulfur binding NADH dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MFNLLSALRKQRLWDFPGGIHPPEMKSQSSNVPLRSVPLPDKLIIPLKQHLGPEGELRVAPGDNVLRGQPLTAGSGRTLP
VHAPTSGTIAAITPHRTAHPSGLAELCVILLPDGKDQWVALKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLGG
GEHGVETLIINGAECEPYITADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCEHPTGELRVIP
TKYPSGGAKQLTKILTGKEVPVGQHSAAIGVVMLNVGTVYAIKRAVVDGEALTERVVTLTGEALARPGNVWARLGTPVSH
LLAHAGFMPAAEPTVIMGGPLMGFTLPALDVPVVKISNCLLAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFS
RGQEHDKARQHHLFDCIECGACAYVCPSNIPLVHYYRQQKAEIRALDDDARRAAMAKARYEAKLARREREKQQRLAHHQQ
AAVKLDDAAAAATSLPDNTASMASSPQAAVAAAIARVKARRQAVQEAAGHPSQATPASPSVGVREESDNVTNAATSPIAS
DGTLTPAPDNLGTEASRTVSPVASGNRDMNDIGPRKAAQESTVLIDRVDAAPDCDENAASGDNVITLVTTTPRPEGNAAG
GQRRDHRPAEGGTEPSRRDHNFV

Sequences:

>Translated_663_residues
MFNLLSALRKQRLWDFPGGIHPPEMKSQSSNVPLRSVPLPDKLIIPLKQHLGPEGELRVAPGDNVLRGQPLTAGSGRTLP
VHAPTSGTIAAITPHRTAHPSGLAELCVILLPDGKDQWVALKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLGG
GEHGVETLIINGAECEPYITADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCEHPTGELRVIP
TKYPSGGAKQLTKILTGKEVPVGQHSAAIGVVMLNVGTVYAIKRAVVDGEALTERVVTLTGEALARPGNVWARLGTPVSH
LLAHAGFMPAAEPTVIMGGPLMGFTLPALDVPVVKISNCLLAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFS
RGQEHDKARQHHLFDCIECGACAYVCPSNIPLVHYYRQQKAEIRALDDDARRAAMAKARYEAKLARREREKQQRLAHHQQ
AAVKLDDAAAAATSLPDNTASMASSPQAAVAAAIARVKARRQAVQEAAGHPSQATPASPSVGVREESDNVTNAATSPIAS
DGTLTPAPDNLGTEASRTVSPVASGNRDMNDIGPRKAAQESTVLIDRVDAAPDCDENAASGDNVITLVTTTPRPEGNAAG
GQRRDHRPAEGGTEPSRRDHNFV
>Mature_663_residues
MFNLLSALRKQRLWDFPGGIHPPEMKSQSSNVPLRSVPLPDKLIIPLKQHLGPEGELRVAPGDNVLRGQPLTAGSGRTLP
VHAPTSGTIAAITPHRTAHPSGLAELCVILLPDGKDQWVALKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLGG
GEHGVETLIINGAECEPYITADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCEHPTGELRVIP
TKYPSGGAKQLTKILTGKEVPVGQHSAAIGVVMLNVGTVYAIKRAVVDGEALTERVVTLTGEALARPGNVWARLGTPVSH
LLAHAGFMPAAEPTVIMGGPLMGFTLPALDVPVVKISNCLLAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFS
RGQEHDKARQHHLFDCIECGACAYVCPSNIPLVHYYRQQKAEIRALDDDARRAAMAKARYEAKLARREREKQQRLAHHQQ
AAVKLDDAAAAATSLPDNTASMASSPQAAVAAAIARVKARRQAVQEAAGHPSQATPASPSVGVREESDNVTNAATSPIAS
DGTLTPAPDNLGTEASRTVSPVASGNRDMNDIGPRKAAQESTVLIDRVDAAPDCDENAASGDNVITLVTTTPRPEGNAAG
GQRRDHRPAEGGTEPSRRDHNFV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=484, Percent_Identity=67.3553719008264, Blast_Score=688, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 70411; Mature: 70411

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNLLSALRKQRLWDFPGGIHPPEMKSQSSNVPLRSVPLPDKLIIPLKQHLGPEGELRVA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEHHHHHHCCCCCCEEEC
PGDNVLRGQPLTAGSGRTLPVHAPTSGTIAAITPHRTAHPSGLAELCVILLPDGKDQWVA
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHEEEEEEECCCCCCEEE
LKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLGGGEHGVETLIINGAECEPYIT
EECHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEC
ADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCEHPTGELRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
TKYPSGGAKQLTKILTGKEVPVGQHSAAIGVVMLNVGTVYAIKRAVVDGEALTERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHC
GEALARPGNVWARLGTPVSHLLAHAGFMPAAEPTVIMGGPLMGFTLPALDVPVVKISNCL
CHHHCCCCCHHEECCCCHHHHHHHCCCCCCCCCCEEECCCHHHCCCCCCCCCHHHHHCCC
LAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFSRGQEHDKARQHHLFDCIECG
CCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
ACAYVCPSNIPLVHYYRQQKAEIRALDDDARRAAMAKARYEAKLARREREKQQRLAHHQQ
CEEEECCCCCCEEHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLDDAAAAATSLPDNTASMASSPQAAVAAAIARVKARRQAVQEAAGHPSQATPASPS
HHEEECHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VGVREESDNVTNAATSPIASDGTLTPAPDNLGTEASRTVSPVASGNRDMNDIGPRKAAQE
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCHHCCCHHHHCC
STVLIDRVDAAPDCDENAASGDNVITLVTTTPRPEGNAAGGQRRDHRPAEGGTEPSRRDH
CEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NFV
CCC
>Mature Secondary Structure
MFNLLSALRKQRLWDFPGGIHPPEMKSQSSNVPLRSVPLPDKLIIPLKQHLGPEGELRVA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEHHHHHHCCCCCCEEEC
PGDNVLRGQPLTAGSGRTLPVHAPTSGTIAAITPHRTAHPSGLAELCVILLPDGKDQWVA
CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHEEEEEEECCCCCCEEE
LKPLVDFQHSSSAQLLSRIHESGIAGLGGAGFPTAAKLGGGEHGVETLIINGAECEPYIT
EECHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCEEC
ADDRLMREHARDIVTGMAILHHMLRPRRLLLGIEDNKPAAIAVLKDALCEHPTGELRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
TKYPSGGAKQLTKILTGKEVPVGQHSAAIGVVMLNVGTVYAIKRAVVDGEALTERVVTLT
CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHC
GEALARPGNVWARLGTPVSHLLAHAGFMPAAEPTVIMGGPLMGFTLPALDVPVVKISNCL
CHHHCCCCCHHEECCCCHHHHHHHCCCCCCCCCCEEECCCHHHCCCCCCCCCHHHHHCCC
LAPSVQELAPAEPEQSCIRCSRCADACPASLLPQQLYWFSRGQEHDKARQHHLFDCIECG
CCCCHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
ACAYVCPSNIPLVHYYRQQKAEIRALDDDARRAAMAKARYEAKLARREREKQQRLAHHQQ
CEEEECCCCCCEEHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLDDAAAAATSLPDNTASMASSPQAAVAAAIARVKARRQAVQEAAGHPSQATPASPS
HHEEECHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
VGVREESDNVTNAATSPIASDGTLTPAPDNLGTEASRTVSPVASGNRDMNDIGPRKAAQE
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCHHCCCHHHHCC
STVLIDRVDAAPDCDENAASGDNVITLVTTTPRPEGNAAGGQRRDHRPAEGGTEPSRRDH
CEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NFV
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA