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The map label for this gene is rnfD

Identifier: 85059430

GI number: 85059430

Start: 2425640

End: 2426680

Strand: Reverse

Name: rnfD

Synonym: SG1452

Alternate gene names: 85059430

Gene position: 2426680-2425640 (Counterclockwise)

Preceding gene: 85059431

Following gene: 85059429

Centisome position: 58.18

GC content: 59.56

Gene sequence:

>1041_bases
ATGGCGTTTAGAATTGCAAGTTCTCCCTTCACCCATAACCGGCAAACCACCCGGCAAATCATGATTCAGGTCATGCTAGC
TTGTCTGCCGGGGCTAATGGCATTAACGACTTTTTTTGGCAGCGGCATTATTATCCAGCTGGTGATAGCCTGCGTGACGG
CGCTGGTGGCCGAAGGTGTGGTGTTGACGCTACGTCGTCAACCGCTGGCTTCCCGACTGGGCGACGGCTCTGCTCTCCTT
ACCGCTCTCCTGCTGGCGCTAAGCCTGCCGCCCCTGGGCCCGTGGTGGATGATGGTGCTGGCGACGGCGTTTGCGATAGT
CATCGCCAAACAGCTTTACGGCGGTCTGGGACATAATCCTTTCAATCCGGCGATGGTGGGATATGTGGTCCTGCTGATTT
CCTTTCCGGTGCAGATGACCAGTTGGTCTCCCCAGCAAAGCCTGCTGCTGCATCCCGTTTCACTGACCGACAGCATGGCG
CTGATTTTCACAGGCGTCACGCCGGACGGGCTGACGCTCACCCAACTCCGCGCTACCGTCGATGGCATAACGCAGGCCAC
GCCGCTCGATGGCTTCAAAACCGGGCTGCGCACCGGCGCGATGACTGCTTTCCACCATCGCTGGGACTGGCAGGCGAGCG
CGGGATGGACATGGGCCAACATTGGCTTTTTACTGGGTGGGCTATATCTGATCTGGCGGCGGGTCATCAGCTGGCATATT
CCGCTCAGCCTCCTGGCCGCCATGCTCATTGGCGCCGGGCTCGGGCACTGGCTGGCGCCTGTGGTGAGCGCGCCGCCTTT
ACTCCACCTGTTTTCCGGCGCTACGATGCTGGGTGCGTTTTTCATTGCCACCGATCCGGTGACTGCTGCTGCCACCGTGC
GAGGACGGGTGATTTTTGGCGCGTTAACGGGTTTGTTGGTATGGCTAATCCGTACCTGGGGAGGTTACCCTGATGGCGTG
GCCTTCGCCGTACTGCTGGCCAATATCTGCGTGCCGCTGATTGACCACTACACTCAGCCACGCGCATATGGCCATCGATA
A

Upstream 100 bases:

>100_bases
GAGGGCAACGCCGCAGGGGGCCAGCGCCGCGATCACCGCCCGGCAGAAGGCGGAACAGAGCCTTCCCGCCGCGACCACAA
TTTCGTCTGAAGAGGACTAA

Downstream 100 bases:

>100_bases
GGAAGGTAGGATGTTAATGACAATGAGGAAGCATGGCATAACCCTTGCTGTATTCGCCGCTCTGGCTACCGGGTTGACGG
CCCTGGTCAACGGCCTGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MAFRIASSPFTHNRQTTRQIMIQVMLACLPGLMALTTFFGSGIIIQLVIACVTALVAEGVVLTLRRQPLASRLGDGSALL
TALLLALSLPPLGPWWMMVLATAFAIVIAKQLYGGLGHNPFNPAMVGYVVLLISFPVQMTSWSPQQSLLLHPVSLTDSMA
LIFTGVTPDGLTLTQLRATVDGITQATPLDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHI
PLSLLAAMLIGAGLGHWLAPVVSAPPLLHLFSGATMLGAFFIATDPVTAAATVRGRVIFGALTGLLVWLIRTWGGYPDGV
AFAVLLANICVPLIDHYTQPRAYGHR

Sequences:

>Translated_346_residues
MAFRIASSPFTHNRQTTRQIMIQVMLACLPGLMALTTFFGSGIIIQLVIACVTALVAEGVVLTLRRQPLASRLGDGSALL
TALLLALSLPPLGPWWMMVLATAFAIVIAKQLYGGLGHNPFNPAMVGYVVLLISFPVQMTSWSPQQSLLLHPVSLTDSMA
LIFTGVTPDGLTLTQLRATVDGITQATPLDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHI
PLSLLAAMLIGAGLGHWLAPVVSAPPLLHLFSGATMLGAFFIATDPVTAAATVRGRVIFGALTGLLVWLIRTWGGYPDGV
AFAVLLANICVPLIDHYTQPRAYGHR
>Mature_345_residues
AFRIASSPFTHNRQTTRQIMIQVMLACLPGLMALTTFFGSGIIIQLVIACVTALVAEGVVLTLRRQPLASRLGDGSALLT
ALLLALSLPPLGPWWMMVLATAFAIVIAKQLYGGLGHNPFNPAMVGYVVLLISFPVQMTSWSPQQSLLLHPVSLTDSMAL
IFTGVTPDGLTLTQLRATVDGITQATPLDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHIP
LSLLAAMLIGAGLGHWLAPVVSAPPLLHLFSGATMLGAFFIATDPVTAAATVRGRVIFGALTGLLVWLIRTWGGYPDGVA
FAVLLANICVPLIDHYTQPRAYGHR

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=59.1428571428571, Blast_Score=406, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_SODGM (Q2NSZ8)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_455132.1
- STRING:   Q2NSZ8
- GeneID:   3867269
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG1452
- NMPDR:   fig|343509.6.peg.2989
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- PhylomeDB:   Q2NSZ8
- BioCyc:   SGLO343509:SG1452-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 37255; Mature: 37124

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xf7175a0)-; HASH(0xe204af4)-; HASH(0xf90b8bc)-; HASH(0xf90b934)-; HASH(0xf47e820)-; HASH(0xf8da338)-; HASH(0xf565b00)-; HASH(0xf492408)-; HASH(0xeb48fac)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFRIASSPFTHNRQTTRQIMIQVMLACLPGLMALTTFFGSGIIIQLVIACVTALVAEGV
CCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCH
VLTLRRQPLASRLGDGSALLTALLLALSLPPLGPWWMMVLATAFAIVIAKQLYGGLGHNP
HEEECCCHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMVGYVVLLISFPVQMTSWSPQQSLLLHPVSLTDSMALIFTGVTPDGLTLTQLRATV
CCHHHHHHHHHHHHCCHHHCCCCCCHHHEEECCCCCCCEEEEEECCCCCCCHHHHHHHHH
DGITQATPLDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHI
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PLSLLAAMLIGAGLGHWLAPVVSAPPLLHLFSGATMLGAFFIATDPVTAAATVRGRVIFG
CHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
ALTGLLVWLIRTWGGYPDGVAFAVLLANICVPLIDHYTQPRAYGHR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
>Mature Secondary Structure 
AFRIASSPFTHNRQTTRQIMIQVMLACLPGLMALTTFFGSGIIIQLVIACVTALVAEGV
CEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCH
VLTLRRQPLASRLGDGSALLTALLLALSLPPLGPWWMMVLATAFAIVIAKQLYGGLGHNP
HEEECCCHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMVGYVVLLISFPVQMTSWSPQQSLLLHPVSLTDSMALIFTGVTPDGLTLTQLRATV
CCHHHHHHHHHHHHCCHHHCCCCCCHHHEEECCCCCCCEEEEEECCCCCCCHHHHHHHHH
DGITQATPLDGFKTGLRTGAMTAFHHRWDWQASAGWTWANIGFLLGGLYLIWRRVISWHI
HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PLSLLAAMLIGAGLGHWLAPVVSAPPLLHLFSGATMLGAFFIATDPVTAAATVRGRVIFG
CHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
ALTGLLVWLIRTWGGYPDGVAFAVLLANICVPLIDHYTQPRAYGHR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA