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The map label for this gene is lptE

Identifier: 85058780

GI number: 85058780

Start: 1354966

End: 1355544

Strand: Reverse

Name: lptE

Synonym: SG0802

Alternate gene names: 85058780

Gene position: 1355544-1354966 (Counterclockwise)

Preceding gene: 85058781

Following gene: 85058779

Centisome position: 32.5

GC content: 59.07

Gene sequence:

>579_bases
GTGCGATATTGGACTTTAGCACTGGTACTGGGCCTGGCGGTGACGATCACCGCCGGCTGTGGTTATCACCTGCGCGGCAC
CACAGACCAGGTGCCGACCGAAATGAAAACCATGACCCTGAACAGTTATGATCCTTACGGGCCGCTCACCCGCGCCGTGC
GGGCGGAACTACGTCTGAACGATGTGACGCTGGTTGACGACGCCCAGGACAAAAACAATACGCTGCCGTCGCTGCGTATT
GTCAATTCCTCGGAAAATCAGGTCACCGCCTCGGTGTTTCAGGACGGTAAAACCGCCGAATACCAGATGACGCTGGGCGT
ACACGCGCAGGTCCTGATGCCCGGCGAAGATTACTATCCTATCGACGTCAAGGTTTATCGCTCGTTCTTCGATAACCCGC
TAACGGCGCTGGCGAAGGATGCCGAAGGGGATATTATTCGCCAGGAGATGCGCCAGCAGGCCGCGCAGCAGCTGGTACGT
AAGCTGCTGACAGTGCATGCCGCGGAAGAGGCGGATAAGGCGCTGGACGCAAAACTGAAACAGCAGCAGCCACCGCAGCC
GGTGGCGCCGGCCTCCTGA

Upstream 100 bases:

>100_bases
ATCTAGTGGCGAAACATCTTGAAGGGACCACGGTGCGCAAAGTGATTTATGTACCGGGTAAGCTGCTTAACCTGGTTGTG
GGTTAACAGAAGGAGGCGTT

Downstream 100 bases:

>100_bases
TGACCCTGTGTCTGGTGAAACGGCGGTCAGCGTCATGATTCGGCTGTATGCCGAACAGTTGGCTGCGCAATTACTGGAAG
CACTGCGCCCATGTTATCTG

Product: LPS-assembly lipoprotein RlpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRYWTLALVLGLAVTITAGCGYHLRGTTDQVPTEMKTMTLNSYDPYGPLTRAVRAELRLNDVTLVDDAQDKNNTLPSLRI
VNSSENQVTASVFQDGKTAEYQMTLGVHAQVLMPGEDYYPIDVKVYRSFFDNPLTALAKDAEGDIIRQEMRQQAAQQLVR
KLLTVHAAEEADKALDAKLKQQQPPQPVAPAS

Sequences:

>Translated_192_residues
MRYWTLALVLGLAVTITAGCGYHLRGTTDQVPTEMKTMTLNSYDPYGPLTRAVRAELRLNDVTLVDDAQDKNNTLPSLRI
VNSSENQVTASVFQDGKTAEYQMTLGVHAQVLMPGEDYYPIDVKVYRSFFDNPLTALAKDAEGDIIRQEMRQQAAQQLVR
KLLTVHAAEEADKALDAKLKQQQPPQPVAPAS
>Mature_192_residues
MRYWTLALVLGLAVTITAGCGYHLRGTTDQVPTEMKTMTLNSYDPYGPLTRAVRAELRLNDVTLVDDAQDKNNTLPSLRI
VNSSENQVTASVFQDGKTAEYQMTLGVHAQVLMPGEDYYPIDVKVYRSFFDNPLTALAKDAEGDIIRQEMRQQAAQQLVR
KLLTVHAAEEADKALDAKLKQQQPPQPVAPAS

Specific function: Together with lptD, is involved in the assembly of LPS in the outer leaflet of the outer membrane

COG id: COG2980

COG function: function code M; Rare lipoprotein B

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptE lipoprotein family

Homologues:

Organism=Escherichia coli, GI1786860, Length=169, Percent_Identity=57.9881656804734, Blast_Score=187, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPTE_SODGM (Q2NUU8)

Other databases:

- EMBL:   AP008232
- RefSeq:   YP_454482.1
- ProteinModelPortal:   Q2NUU8
- SMR:   Q2NUU8
- STRING:   Q2NUU8
- GeneID:   3868485
- GenomeReviews:   AP008232_GR
- KEGG:   sgl:SG0802
- NMPDR:   fig|343509.6.peg.1726
- eggNOG:   COG2980
- HOGENOM:   HBG644504
- OMA:   TAGCGFH
- PhylomeDB:   Q2NUU8
- ProtClustDB:   PRK10796
- BioCyc:   SGLO343509:SG0802-MONOMER
- HAMAP:   MF_01186
- InterPro:   IPR007485

Pfam domain/function: PF04390 RplB

EC number: NA

Molecular weight: Translated: 21292; Mature: 21292

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYWTLALVLGLAVTITAGCGYHLRGTTDQVPTEMKTMTLNSYDPYGPLTRAVRAELRLN
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHEEC
DVTLVDDAQDKNNTLPSLRIVNSSENQVTASVFQDGKTAEYQMTLGVHAQVLMPGEDYYP
CEEEEECCCCCCCCCCEEEEEECCCCEEEHHHHCCCCCCEEEEEECCEEEEEECCCCCCC
IDVKVYRSFFDNPLTALAKDAEGDIIRQEMRQQAAQQLVRKLLTVHAAEEADKALDAKLK
CHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQQPPQPVAPAS
HCCCCCCCCCCC
>Mature Secondary Structure
MRYWTLALVLGLAVTITAGCGYHLRGTTDQVPTEMKTMTLNSYDPYGPLTRAVRAELRLN
CHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHEEC
DVTLVDDAQDKNNTLPSLRIVNSSENQVTASVFQDGKTAEYQMTLGVHAQVLMPGEDYYP
CEEEEECCCCCCCCCCEEEEEECCCCEEEHHHHCCCCCCEEEEEECCEEEEEECCCCCCC
IDVKVYRSFFDNPLTALAKDAEGDIIRQEMRQQAAQQLVRKLLTVHAAEEADKALDAKLK
CHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQQPPQPVAPAS
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA