| Definition | Sodalis glossinidius str. 'morsitans', complete genome. |
|---|---|
| Accession | NC_007712 |
| Length | 4,171,146 |
Click here to switch to the map view.
The map label for this gene is 85058697
Identifier: 85058697
GI number: 85058697
Start: 1202306
End: 1203805
Strand: Reverse
Name: 85058697
Synonym: SG0719
Alternate gene names: NA
Gene position: 1203805-1202306 (Counterclockwise)
Preceding gene: 85058698
Following gene: 85058696
Centisome position: 28.86
GC content: 50.53
Gene sequence:
>1500_bases ATGACCATTAGCTTTAATACCGTGAACGCTAATCTGCGAGTGCCTGGTTTCTATCCCGAAATGGATAACAGCGCTGCCAA TACGTTGCAAGCCAGCGGCCCCGCACTGCTTATTGGGCATGCACTACCCACTGCACAAATGACCTTGAATTCACCGATGA TCATGCCCTCGGCAGAAATGATACAACAATTAGCCGGTCGTGGCAGCCAGTTGCACCGCATGGTGCAAGCGTATCGCCGA ATTGATGCTGTCGGTGAACTGTTTGTCATTGCCGTACCTGAAACAATGGGCACTGAAGCAAAAGGAGACATCACGATTAG CGGGACAGCAACCGACTCTGGTGTCGTCACTCTCTATATCGGCAATCAACGTATTTTAGCTGCCGTCAAGAAATCGGATA CGGCGAATACGGTTGCTGCCGCGCTTGGCAAGGCCATTAACGATAACGAGGACTTACCCGTCACCGCGACTATAGATGCT GACAAAATCAGCTTGACGGCAAAACATAAAGGGTTAACCGGCAACGATATTCCCTTGATGATGAACTATTATTCGCCGAC AGGCGGTGAGAATACGCCTCACGGTCTTAATATTACCATTACTGCCATGAGTGGCGGTGCTGGCTCTCCCGATATGGATA GCGTTATCAGCGCAATGGGTGACTTATTATTTGATTTTATTGGGCTGCCTTTCTCTGATACTGCCTCTTTGCAAAAGATG AGCGCGGAGATGAACGACACGAACGGTCGCTGGAGTCCTTATCAACGGTTATACGGTCATGTTTATACCGCAAAAAAAGC GACGGTCGGTGAACTGGTCGCTTTTGGCGACACCTTTAATGATCCGCATCTCACCATTGCAGGCTATGAGAAAGCGACAC AAACTGCGCTGGATGAACTGGTCGCGGCAAGACTGGCACGGTGCGCGATATTTTTGCGTAATGATCCCGCCAGACCGACC CACACGGGCGAGTTAAACGGGGTGTTACCCGCACCGTCGGGCAAACGCTTCACCTTGACAGAGCAGCAATCCCTGCTTTC ACACGGTATCGCTACCGCCAATGTCGAAGGCGGCGTATTACGCATTCAGCGTGATGTGACGACCTACCAGAAAAACAGTT ACGGCGTGGCCGATAACAGCTATCTGGACAGTGAAACACTCTATACCAGCGCTTATATTTTGCGGCGATTGAAGTCGGTG ATCACCAGCAAGTACGGGCGGCAAAAACTGGCTGATGATGGTACCCGATTCGGGGCAGGGCAAGCGATCGTTACGCCAGC CGTGATCAAGGGTGAACTCTGTGCGGTGTATCGCCAGTTGGAAAATGAAGGGATTGTCGAAAATTTTGACGCTTTTCGTC AACATCTCATCGTTGAGCGCAACGCCAATGACCCCAATCGAATTGATGTGGTCTTTCCTGCGGATTATATCAATCAACTG CGGGTATTTGCGTTGGCGAATCAATTCAGGCTGCAATATAACCAGGGTGAGGTGGTGTGA
Upstream 100 bases:
>100_bases ATATTGAGGAAGTGAGTCAATTCTATACCTCCCCAATCGTGCAAGAGACGTCTGATACCGCAAAAACTAAATTAAAAAAA GCTAAAGAGGAGACGCAGGA
Downstream 100 bases:
>100_bases TGACGGGCAAAAGAAAAATAGGTGGCACCTGCTATTTTAAGGTGGACGGCCAACAACTCTCACTGAATGGCAGTGTAGAA GTGCCGATGAATACGGTTAT
Product: phage tail sheath protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MTISFNTVNANLRVPGFYPEMDNSAANTLQASGPALLIGHALPTAQMTLNSPMIMPSAEMIQQLAGRGSQLHRMVQAYRR IDAVGELFVIAVPETMGTEAKGDITISGTATDSGVVTLYIGNQRILAAVKKSDTANTVAAALGKAINDNEDLPVTATIDA DKISLTAKHKGLTGNDIPLMMNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDTASLQKM SAEMNDTNGRWSPYQRLYGHVYTAKKATVGELVAFGDTFNDPHLTIAGYEKATQTALDELVAARLARCAIFLRNDPARPT HTGELNGVLPAPSGKRFTLTEQQSLLSHGIATANVEGGVLRIQRDVTTYQKNSYGVADNSYLDSETLYTSAYILRRLKSV ITSKYGRQKLADDGTRFGAGQAIVTPAVIKGELCAVYRQLENEGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQL RVFALANQFRLQYNQGEVV
Sequences:
>Translated_499_residues MTISFNTVNANLRVPGFYPEMDNSAANTLQASGPALLIGHALPTAQMTLNSPMIMPSAEMIQQLAGRGSQLHRMVQAYRR IDAVGELFVIAVPETMGTEAKGDITISGTATDSGVVTLYIGNQRILAAVKKSDTANTVAAALGKAINDNEDLPVTATIDA DKISLTAKHKGLTGNDIPLMMNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDTASLQKM SAEMNDTNGRWSPYQRLYGHVYTAKKATVGELVAFGDTFNDPHLTIAGYEKATQTALDELVAARLARCAIFLRNDPARPT HTGELNGVLPAPSGKRFTLTEQQSLLSHGIATANVEGGVLRIQRDVTTYQKNSYGVADNSYLDSETLYTSAYILRRLKSV ITSKYGRQKLADDGTRFGAGQAIVTPAVIKGELCAVYRQLENEGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQL RVFALANQFRLQYNQGEVV >Mature_498_residues TISFNTVNANLRVPGFYPEMDNSAANTLQASGPALLIGHALPTAQMTLNSPMIMPSAEMIQQLAGRGSQLHRMVQAYRRI DAVGELFVIAVPETMGTEAKGDITISGTATDSGVVTLYIGNQRILAAVKKSDTANTVAAALGKAINDNEDLPVTATIDAD KISLTAKHKGLTGNDIPLMMNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDTASLQKMS AEMNDTNGRWSPYQRLYGHVYTAKKATVGELVAFGDTFNDPHLTIAGYEKATQTALDELVAARLARCAIFLRNDPARPTH TGELNGVLPAPSGKRFTLTEQQSLLSHGIATANVEGGVLRIQRDVTTYQKNSYGVADNSYLDSETLYTSAYILRRLKSVI TSKYGRQKLADDGTRFGAGQAIVTPAVIKGELCAVYRQLENEGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQLR VFALANQFRLQYNQGEVV
Specific function: Major component of the tail [H]
COG id: COG4386
COG function: function code R; Mu-like prophage tail sheath protein gpL
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein L [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007067 [H]
Pfam domain/function: PF04984 Phage_sheath_1 [H]
EC number: NA
Molecular weight: Translated: 53908; Mature: 53776
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTISFNTVNANLRVPGFYPEMDNSAANTLQASGPALLIGHALPTAQMTLNSPMIMPSAEM CEEEEEEEECEEECCCCCCCCCCCHHHHEECCCCEEEEECCCCCCEEECCCCCCCCCHHH IQQLAGRGSQLHRMVQAYRRIDAVGELFVIAVPETMGTEAKGDITISGTATDSGVVTLYI HHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCEEEEECCCCCCEEEEEE GNQRILAAVKKSDTANTVAAALGKAINDNEDLPVTATIDADKISLTAKHKGLTGNDIPLM CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEE MNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDTASLQKM EEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH SAEMNDTNGRWSPYQRLYGHVYTAKKATVGELVAFGDTFNDPHLTIAGYEKATQTALDEL HHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEECCCCCCCEEEEECCHHHHHHHHHHH VAARLARCAIFLRNDPARPTHTGELNGVLPAPSGKRFTLTEQQSLLSHGIATANVEGGVL HHHHHHHHEEEEECCCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHCCCEEEECCCCEE RIQRDVTTYQKNSYGVADNSYLDSETLYTSAYILRRLKSVITSKYGRQKLADDGTRFGAG EEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC QAIVTPAVIKGELCAVYRQLENEGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQL CEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCEEEEEECHHHHHHH RVFALANQFRLQYNQGEVV HHHHHHHHHEEEECCCCCC >Mature Secondary Structure TISFNTVNANLRVPGFYPEMDNSAANTLQASGPALLIGHALPTAQMTLNSPMIMPSAEM EEEEEEEECEEECCCCCCCCCCCHHHHEECCCCEEEEECCCCCCEEECCCCCCCCCHHH IQQLAGRGSQLHRMVQAYRRIDAVGELFVIAVPETMGTEAKGDITISGTATDSGVVTLYI HHHHHCCCHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCCCEEEEECCCCCCEEEEEE GNQRILAAVKKSDTANTVAAALGKAINDNEDLPVTATIDADKISLTAKHKGLTGNDIPLM CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEE MNYYSPTGGENTPHGLNITITAMSGGAGSPDMDSVISAMGDLLFDFIGLPFSDTASLQKM EEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH SAEMNDTNGRWSPYQRLYGHVYTAKKATVGELVAFGDTFNDPHLTIAGYEKATQTALDEL HHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEECCCCCCCEEEEECCHHHHHHHHHHH VAARLARCAIFLRNDPARPTHTGELNGVLPAPSGKRFTLTEQQSLLSHGIATANVEGGVL HHHHHHHHEEEEECCCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHCCCEEEECCCCEE RIQRDVTTYQKNSYGVADNSYLDSETLYTSAYILRRLKSVITSKYGRQKLADDGTRFGAG EEEECHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCC QAIVTPAVIKGELCAVYRQLENEGIVENFDAFRQHLIVERNANDPNRIDVVFPADYINQL CEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEEEECCCCCCCEEEEEECHHHHHHH RVFALANQFRLQYNQGEVV HHHHHHHHHEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]