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The map label for this gene is cyoD [H]

Identifier: 85058642

GI number: 85058642

Start: 1127651

End: 1127983

Strand: Reverse

Name: cyoD [H]

Synonym: SG0664

Alternate gene names: 85058642

Gene position: 1127983-1127651 (Counterclockwise)

Preceding gene: 85058643

Following gene: 85058641

Centisome position: 27.04

GC content: 51.05

Gene sequence:

>333_bases
ATGAGTCATGCATCCGCAGGGCATACTGGCGCCAGCCAAGGCAGCCATAAGTCTTATTTGATTGGTTTTATTCTCTCCAT
CATCCTGACGGTAATTCCGTTTGCCATAGTGATGCAGGGCTCCGCCAGCGAAAGCATGCTGATCGCGGTGCTGGTGATTT
GCGCAGTCGTACAGATTGTGGTTCATCTGGTGTACTTCCTGCACCTCAGTACGTCGTCCGAGCAGCAGTGGAATCTGATA
GCCTTTGTGTTTGCGGTGATGATCATCGCCATCCTGGTAGTCGGCTCCTTGTGGATTATGTGGTACCTCAATCACAACTT
GATGGGCCACTAA

Upstream 100 bases:

>100_bases
TTAACCAAACCCGTTTGCAGTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTGTGGATTTGCGTCTTTACCGTGGTG
TATTTAATGGGGGCACTTTA

Downstream 100 bases:

>100_bases
CAGAGCACAACGGTAATGATTAAGCAATACCTGCAAGTAACAAAACCAGGAATTATTTTCGGTAATCTAATTTCTGTCAT
CGGGGGCTTCTTGCTGGCCG

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSHASAGHTGASQGSHKSYLIGFILSIILTVIPFAIVMQGSASESMLIAVLVICAVVQIVVHLVYFLHLSTSSEQQWNLI
AFVFAVMIIAILVVGSLWIMWYLNHNLMGH

Sequences:

>Translated_110_residues
MSHASAGHTGASQGSHKSYLIGFILSIILTVIPFAIVMQGSASESMLIAVLVICAVVQIVVHLVYFLHLSTSSEQQWNLI
AFVFAVMIIAILVVGSLWIMWYLNHNLMGH
>Mature_109_residues
SHASAGHTGASQGSHKSYLIGFILSIILTVIPFAIVMQGSASESMLIAVLVICAVVQIVVHLVYFLHLSTSSEQQWNLIA
FVFAVMIIAILVVGSLWIMWYLNHNLMGH

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=110, Percent_Identity=61.8181818181818, Blast_Score=135, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 12009; Mature: 11877

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHASAGHTGASQGSHKSYLIGFILSIILTVIPFAIVMQGSASESMLIAVLVICAVVQIV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VHLVYFLHLSTSSEQQWNLIAFVFAVMIIAILVVGSLWIMWYLNHNLMGH
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SHASAGHTGASQGSHKSYLIGFILSIILTVIPFAIVMQGSASESMLIAVLVICAVVQIV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VHLVYFLHLSTSSEQQWNLIAFVFAVMIIAILVVGSLWIMWYLNHNLMGH
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]