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The map label for this gene is yfiO [H]

Identifier: 85058560

GI number: 85058560

Start: 981622

End: 982353

Strand: Reverse

Name: yfiO [H]

Synonym: SG0582

Alternate gene names: 85058560

Gene position: 982353-981622 (Counterclockwise)

Preceding gene: 85058563

Following gene: 85058559

Centisome position: 23.55

GC content: 55.6

Gene sequence:

>732_bases
ATGATGCGTATGAAATATCTGGTGGCAGCCGCCACACTTTGCCTGGTGCTGGCGGGTTGTTCCAGTAACAAAGACGCCGT
TCCCGATAATCCCCCCTCCGAGATCTATGCCTCCGCGCAGCAAAAGTTGCAGGACGGTAATTACAAAGGCGCAATCAAGG
AGCTTGAAGCGCTGGACAACCGTTATCCGTTCGGTCCCTACGCGCAGCAGGTTCAGCTTGACTTGATTTATGCCTACTAC
AAATCCGCCGATCTGCCGCTGGCACAAGCCTCTATCGATCGTTTTCTGCGGCTGAATCCGACTCATCCGAATGTCGACTA
CGTCCTTTACATGCGGGGTTTGACCGATATGGCGCTGGATGACAGCGCATTGCAAGGATTCTTCGGCGTGGACCGTTCCG
ATCGCAACCCGGAGCATGCCCGCGCGGCGTTCCGTGATTTCACGCAGTTAATTCGAGGTTATCCGAACAGCCAGTATGCC
ATGGATGCCACCAAACGTCTGGTTTATCTCAAAGACCGGCTGGCCAAGCATGAATTGTCCGTAGTGGAGTACTACGACAA
ACGCGGTGCTTATGTCGCGGTGGCCAATCGCGTGGAGCAAATGCTGCGCGACTTCCCCGACACGCAGGCGACGCGCCAAG
CGCTGCCCTACATGGAAAAAGCCTACCGGGAATTGCAGTTGAGCGGCCAGGCGGACAAAATGTCGAAAATCAGAGCGGCG
AATCCGGCCTGA

Upstream 100 bases:

>100_bases
CGGCGATGCCGTTTAAAATAGTATGCTATTATAGCTGGTCTCATCCGAGAGCTAAACGGACAGTCTCCCGGAACAACACT
CTGAGGATAAGCAAAACGTC

Downstream 100 bases:

>100_bases
TGCCGTGGCGAGACGTGCTATGAACAGCGGCTTCGGCCGCCGTTTCTAAAAGGTTAACCTGATAATATTGCCCCATTGTG
CATGCGCTGACAAGGGCAGA

Product: outer membrane protein assembly complex subunit YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MMRMKYLVAAATLCLVLAGCSSNKDAVPDNPPSEIYASAQQKLQDGNYKGAIKELEALDNRYPFGPYAQQVQLDLIYAYY
KSADLPLAQASIDRFLRLNPTHPNVDYVLYMRGLTDMALDDSALQGFFGVDRSDRNPEHARAAFRDFTQLIRGYPNSQYA
MDATKRLVYLKDRLAKHELSVVEYYDKRGAYVAVANRVEQMLRDFPDTQATRQALPYMEKAYRELQLSGQADKMSKIRAA
NPA

Sequences:

>Translated_243_residues
MMRMKYLVAAATLCLVLAGCSSNKDAVPDNPPSEIYASAQQKLQDGNYKGAIKELEALDNRYPFGPYAQQVQLDLIYAYY
KSADLPLAQASIDRFLRLNPTHPNVDYVLYMRGLTDMALDDSALQGFFGVDRSDRNPEHARAAFRDFTQLIRGYPNSQYA
MDATKRLVYLKDRLAKHELSVVEYYDKRGAYVAVANRVEQMLRDFPDTQATRQALPYMEKAYRELQLSGQADKMSKIRAA
NPA
>Mature_243_residues
MMRMKYLVAAATLCLVLAGCSSNKDAVPDNPPSEIYASAQQKLQDGNYKGAIKELEALDNRYPFGPYAQQVQLDLIYAYY
KSADLPLAQASIDRFLRLNPTHPNVDYVLYMRGLTDMALDDSALQGFFGVDRSDRNPEHARAAFRDFTQLIRGYPNSQYA
MDATKRLVYLKDRLAKHELSVVEYYDKRGAYVAVANRVEQMLRDFPDTQATRQALPYMEKAYRELQLSGQADKMSKIRAA
NPA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=241, Percent_Identity=78.8381742738589, Blast_Score=407, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27559; Mature: 27559

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]