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The map label for this gene is ypjD [H]

Identifier: 85058522

GI number: 85058522

Start: 943214

End: 944002

Strand: Reverse

Name: ypjD [H]

Synonym: SG0544

Alternate gene names: 85058522

Gene position: 944002-943214 (Counterclockwise)

Preceding gene: 85058530

Following gene: 162382796

Centisome position: 22.63

GC content: 54.37

Gene sequence:

>789_bases
ATGTCCTGGATTTCCCTTCTGGCCTTTATTTCCTACTCTTTAAGCCTCGGCCTGATTCTGCACAGCATTTTGCGCCGCAG
CAGCGCCTATCGCCGGCTGGCCCTACTGTCGGCCACGGTGACGATGTTGGGACATGGCGTTCTCATCTGGCTACGTATCT
TCGGCGTGCAGGCGGGGCAGAATCTGAGCTTGTTGAACGTGGGCTCCTTAATCAGCCTTATTATTTGCGTGGTGATGACG
GTGGCGGCGTCGCGCAACCGCGGTTGGTTCTTATTGCCTATCGTCTATATCTTCGCGATGATTCATGTGGCGTTCATTAC
GCTGATGCCGGGTGAATTCATCACCCACTTGGAAGCAACGCCCGGTTTGATGGTGCATATCGGCCTGGCGCTGTTTTCCT
ATGCGGTGCTGATTATCGCCGCGCTGTACGCGTTCCAATTGACCTGGCTCGATTACCTGTTGAAAAACAAGAAGCTGAAT
TTTCATTCCGATATGCCGCCGCTGATGGGTATTGAGCGTAAAATGTTCCACATCACGCAGGTCGGCGTGGTGCTGCTGAC
GCTGACGCTCGCCACGGGTCTTTTCTTTATACGGGATTGGTTTGTCGCCGAGAACCGGCATAAAGCGATACTCTCTTTCA
TCGCCTGGCTGGTCTATATTGTAATACTATGGGGTCATTACCGGCAGGGCTGGCGCGGCCGCCGGGTGGTGTGGCTCAGC
GTGCTGGGCGTGCTATTGCTGACGCTGGCCTATTTCGGCAGCCGAATTTGGCAAAATGTGATGGCGTAA

Upstream 100 bases:

>100_bases
AGGCCGGGATCGCTGCACCCCTTACGACAACGGTTGGAGCATGACGCGCTGAAGGCTATACTGGTCGCCTCTTTTATTTA
AGTCAGACGATGACGCTGCT

Downstream 100 bases:

>100_bases
GATAACGCCGATAAGGAAAGCCCACTTTGGAACATGTTTCAACCAGTACACTGCTGATCATCCTTATTATCATGGTATTG
GTTTCCGCCTATTTTTCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSWISLLAFISYSLSLGLILHSILRRSSAYRRLALLSATVTMLGHGVLIWLRIFGVQAGQNLSLLNVGSLISLIICVVMT
VAASRNRGWFLLPIVYIFAMIHVAFITLMPGEFITHLEATPGLMVHIGLALFSYAVLIIAALYAFQLTWLDYLLKNKKLN
FHSDMPPLMGIERKMFHITQVGVVLLTLTLATGLFFIRDWFVAENRHKAILSFIAWLVYIVILWGHYRQGWRGRRVVWLS
VLGVLLLTLAYFGSRIWQNVMA

Sequences:

>Translated_262_residues
MSWISLLAFISYSLSLGLILHSILRRSSAYRRLALLSATVTMLGHGVLIWLRIFGVQAGQNLSLLNVGSLISLIICVVMT
VAASRNRGWFLLPIVYIFAMIHVAFITLMPGEFITHLEATPGLMVHIGLALFSYAVLIIAALYAFQLTWLDYLLKNKKLN
FHSDMPPLMGIERKMFHITQVGVVLLTLTLATGLFFIRDWFVAENRHKAILSFIAWLVYIVILWGHYRQGWRGRRVVWLS
VLGVLLLTLAYFGSRIWQNVMA
>Mature_261_residues
SWISLLAFISYSLSLGLILHSILRRSSAYRRLALLSATVTMLGHGVLIWLRIFGVQAGQNLSLLNVGSLISLIICVVMTV
AASRNRGWFLLPIVYIFAMIHVAFITLMPGEFITHLEATPGLMVHIGLALFSYAVLIIAALYAFQLTWLDYLLKNKKLNF
HSDMPPLMGIERKMFHITQVGVVLLTLTLATGLFFIRDWFVAENRHKAILSFIAWLVYIVILWGHYRQGWRGRRVVWLSV
LGVLLLTLAYFGSRIWQNVMA

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=263, Percent_Identity=63.1178707224335, Blast_Score=327, Evalue=6e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29733; Mature: 29602

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SWISLLAFISYSLSLGLILHSILRRSSAYRRLALLSATVTMLGHGVLIWLRIFGVQAGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLSLLNVGSLISLIICVVMTVAASRNRGWFLLPIVYIFAMIHVAFITLMPGEFITHLEAT
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
PGLMVHIGLALFSYAVLIIAALYAFQLTWLDYLLKNKKLNFHSDMPPLMGIERKMFHITQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
VGVVLLTLTLATGLFFIRDWFVAENRHKAILSFIAWLVYIVILWGHYRQGWRGRRVVWLS
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
VLGVLLLTLAYFGSRIWQNVMA
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]