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The map label for this gene is echR [H]

Identifier: 85058263

GI number: 85058263

Start: 509237

End: 509974

Strand: Reverse

Name: echR [H]

Synonym: SG0285

Alternate gene names: 85058263

Gene position: 509974-509237 (Counterclockwise)

Preceding gene: 85058265

Following gene: 85058261

Centisome position: 12.23

GC content: 38.62

Gene sequence:

>738_bases
ATGTTCTCAATAATTAAGCCATTTACATCTCGGGAAAACGGTCTGGTCACCGCAGAAATTCATGATCTTCTCCAGCATGA
AATGAATATCAATCAGCCTATCCGCTTCGCCTATTTTATTTTCAACAAATCCCAGGATGAAAAACCTGTCATTTATTCAA
ACTACCCGAAAGAATGGGTAGAGAAATACATGAAAAATAAATTATATAAGCAAGATCCCGTTCTATTGGTTGCCAGCCAA
AAGATTATGTCTTTTCCTTGGCAAAAGAATTACTTCAAGAAGACCAAACACCAAAAAAGTAATATTTTCGCCCAAAGCTC
AGAATACAACATTACTCGCGGATATACTTTCCCTCTGCACGATCATGAAAATAATCTGGCTATGCTTAGCCTGTATACTG
AAAGCGATCCCGACCAGTTGATGAAATGTATTAGCGACCATGAGGATCGTTTATATCTGCTATTTCTTTCCATTCATAAC
CGGTTCCTGGCTGAGAAAGCGCAGCAGACCAACACATCAAATACTAAAATAGAAAAAAGACTGACCTCTCGCGAAATCGA
AGCGCTGCATTGGGCAAGTATTGGTAAAACTTATCGTGAAATCGCCATTATTATGGGCATAACAGAAAGTACCGTGAAGT
TCCATATTGGCAACCTTATTGTTAAGCTCGACGTCATTAATGCAAAACACGCTATCAAAAAAGCGACGGACCTGCACTTG
CTTAATTTTAATGAATAG

Upstream 100 bases:

>100_bases
TCTGTTGCTCATTTTCTGTTGGCAGTCTTTGCCCAGAAAATTATCCTTTTGCGCCTCAATATACTGCCTTTATCACTTAA
ATCAAACGATGAGAAGCAAA

Downstream 100 bases:

>100_bases
CTATCTAACGCATTGTCAATGGCTCAAGGAATATATTGCCGGACATTATTCTTTAAGGCCTCGGATAGCTCACGCCATTG
ACAATCAATATCTGTCATAA

Product: transcriptional activator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MFSIIKPFTSRENGLVTAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQ
KIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHN
RFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHL
LNFNE

Sequences:

>Translated_245_residues
MFSIIKPFTSRENGLVTAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQ
KIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHN
RFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHL
LNFNE
>Mature_245_residues
MFSIIKPFTSRENGLVTAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQ
KIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHN
RFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHL
LNFNE

Specific function: Functions as a potential ohlL-responsive transcriptional regulator [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 28831; Mature: 28831

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSIIKPFTSRENGLVTAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKPVIYSNYPKEWV
CCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECCCCHHHH
EKYMKNKLYKQDPVLLVASQKIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLH
HHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCEEEECCCCEEECCEEECCC
DHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKR
CCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCHHHHHH
LTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHL
HHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHEEEECEEEEEEEEECHHHHHHHHCCEEE
LNFNE
EECCC
>Mature Secondary Structure
MFSIIKPFTSRENGLVTAEIHDLLQHEMNINQPIRFAYFIFNKSQDEKPVIYSNYPKEWV
CCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCEEECCCCHHHH
EKYMKNKLYKQDPVLLVASQKIMSFPWQKNYFKKTKHQKSNIFAQSSEYNITRGYTFPLH
HHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHCEEEECCCCEEECCEEECCC
DHENNLAMLSLYTESDPDQLMKCISDHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKR
CCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCHHHHHH
LTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHL
HHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHEEEECEEEEEEEEECHHHHHHHHCCEEE
LNFNE
EECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA