Click here to switch to the map view.

The map label for this gene is yghB [H]

Identifier: 85058257

GI number: 85058257

Start: 503035

End: 503715

Strand: Reverse

Name: yghB [H]

Synonym: SG0279

Alternate gene names: 85058257

Gene position: 503715-503035 (Counterclockwise)

Preceding gene: 85058258

Following gene: 85058256

Centisome position: 12.08

GC content: 53.89

Gene sequence:

>681_bases
GTGAGTAAGAAGGTTGAGATAAATCTACTAGAAGAGATTATCCGGGCGCTCTGGCATCAGGATTTTGCCGCTTTGGCCGA
TCCCCAGATGATTTGGGTGGTCTATGGGGTAATATTTACCACACTATTTTTGGAAAATGGACTGCTGCCGGCCTCCTTTC
TGCCGGGTGATAGTCTACTGCTGCTCTCAGGTGCGATGGTTGCCAAAGGCGTTATGGCGTTCTTTCCCACGCTGATTATT
CTCAGCGCGGCGGCCGGCCTTGGCTGCTGGTTTAGCTACCTGCAAGACCGCTGGCTGGGAGACACGCGTATCATGAGAAG
CTGGCTGCCCCATTTGCCTGCCCATTATCATTTGCGCGCTTACACCATGTTTAATCGCCATGGCCTGACCGCGCTGCTGG
TCGGTCGCTTTCTAGCTTTTGTGCGCACGCTGTTGCCCACAATGGCCGGCATCTCCGGCCTTAGCAATACCCGTTTCCAG
TTGTTCAATTGGTTAAGCGCGCTAATCTGGGTCACCGTGCTGGTTTCGCTCGGCTATGCCATCAGCCATGTGCCGATGGT
TAAGCATCATGAGGATAAGGTGATGATGGCATTAATTATCCTTCCCCTCGTGCTGCTGGTCACCGGCCTGATAGGCAGCG
TGCTGCTGATTATCCGCCGGCGGCGAGTCAAAAACGCCTAA

Upstream 100 bases:

>100_bases
CCGGTTGACGCTTTGCTGACTAAAATAGATTAAAAAAATGTTTGGTTGGGTGATGGATCAAGGACTGCAATCCGGCGTGG
CGCTAAGCTGTCGATAAAAT

Downstream 100 bases:

>100_bases
GCGCGTCACTGCACATGAGCGCCAACGCCTGTCGCGCGCGAGGCAGGCGAGTGGAAATCCGCTCCATAACTGGCTTTCGG
CGTAACCTATTCCCTTACTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSKKVEINLLEEIIRALWHQDFAALADPQMIWVVYGVIFTTLFLENGLLPASFLPGDSLLLLSGAMVAKGVMAFFPTLII
LSAAAGLGCWFSYLQDRWLGDTRIMRSWLPHLPAHYHLRAYTMFNRHGLTALLVGRFLAFVRTLLPTMAGISGLSNTRFQ
LFNWLSALIWVTVLVSLGYAISHVPMVKHHEDKVMMALIILPLVLLVTGLIGSVLLIIRRRRVKNA

Sequences:

>Translated_226_residues
MSKKVEINLLEEIIRALWHQDFAALADPQMIWVVYGVIFTTLFLENGLLPASFLPGDSLLLLSGAMVAKGVMAFFPTLII
LSAAAGLGCWFSYLQDRWLGDTRIMRSWLPHLPAHYHLRAYTMFNRHGLTALLVGRFLAFVRTLLPTMAGISGLSNTRFQ
LFNWLSALIWVTVLVSLGYAISHVPMVKHHEDKVMMALIILPLVLLVTGLIGSVLLIIRRRRVKNA
>Mature_225_residues
SKKVEINLLEEIIRALWHQDFAALADPQMIWVVYGVIFTTLFLENGLLPASFLPGDSLLLLSGAMVAKGVMAFFPTLIIL
SAAAGLGCWFSYLQDRWLGDTRIMRSWLPHLPAHYHLRAYTMFNRHGLTALLVGRFLAFVRTLLPTMAGISGLSNTRFQL
FNWLSALIWVTVLVSLGYAISHVPMVKHHEDKVMMALIILPLVLLVTGLIGSVLLIIRRRRVKNA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789384, Length=213, Percent_Identity=65.2582159624413, Blast_Score=285, Evalue=2e-78,
Organism=Escherichia coli, GI1789481, Length=215, Percent_Identity=56.7441860465116, Blast_Score=249, Evalue=1e-67,
Organism=Escherichia coli, GI1788656, Length=201, Percent_Identity=27.363184079602, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25379; Mature: 25248

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKVEINLLEEIIRALWHQDFAALADPQMIWVVYGVIFTTLFLENGLLPASFLPGDSLL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LLSGAMVAKGVMAFFPTLIILSAAAGLGCWFSYLQDRWLGDTRIMRSWLPHLPAHYHLRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
YTMFNRHGLTALLVGRFLAFVRTLLPTMAGISGLSNTRFQLFNWLSALIWVTVLVSLGYA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISHVPMVKHHEDKVMMALIILPLVLLVTGLIGSVLLIIRRRRVKNA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKKVEINLLEEIIRALWHQDFAALADPQMIWVVYGVIFTTLFLENGLLPASFLPGDSLL
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LLSGAMVAKGVMAFFPTLIILSAAAGLGCWFSYLQDRWLGDTRIMRSWLPHLPAHYHLRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHH
YTMFNRHGLTALLVGRFLAFVRTLLPTMAGISGLSNTRFQLFNWLSALIWVTVLVSLGYA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISHVPMVKHHEDKVMMALIILPLVLLVTGLIGSVLLIIRRRRVKNA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]