Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 162382796

GI number: 162382796

Start: 941898

End: 943097

Strand: Reverse

Name: yfjD [H]

Synonym: SG0543

Alternate gene names: 162382796

Gene position: 943097-941898 (Counterclockwise)

Preceding gene: 85058522

Following gene: 85058514

Centisome position: 22.61

GC content: 54.0

Gene sequence:

>1200_bases
ATGACGTTAAACCGCTATCGTCTGCGTCATCAGGCCAAACAGGGCAACCGCGGCGCCCGCCGCGTTGAGAAGTTGCTGCG
GCGTACGGATCAATTGCTGAGTCTGGTGCTGATTGGCAATAATCTAGTCAACATTCTTGCGTCGGCGCTGGCGACCATTG
TCGGGATGCGTCTGTACGGCGATCTCGGCGTAGCCATCGCCACCGGCGTTTTGACCTTTGTGGTGCTGCTGTTCGCCGAG
GTGCTGCCAAAAACCGTGGCGGCGCTCTATCCTGAACGTATCGCTTTCCCAAGCAGCCTGCTGTTGGTGCCGCTGCAAAA
ACTAATGTTGCCGATAGTGTGGCTGCTGAATCTGATTACCCGGCTGCTTATGCGGCTGATGGGCATCAGGCTCCCTTCCA
ACGTACGCGATGCGCTGAGTAAGGAAGAGCTGCGCACCATCGTGACGGAATCCCACTCGATGATTTCGCGTCGCAATCAG
GACATGCTGATTTCCGTGCTGGACTTGGAAAAAGTGACCGTTAACGACATCATGGTTCCGCGCAATGAGATTGTCGGCAT
CAACGTCAACGACGAGTGGCGGTCGATTATTCGTCAACTAACCCACTCCCCTCATGGCCGTATCGTGCTGTATCGCGATA
ACCTTGATGACGCAATCGGTATGCTGCGGGTGCGTGAAGCCTACCGTTTGATGACGGAAAAGCAGGAATTTACCAAAGAA
AACCTGCTGCGCGCCGCCGACGAAATTTATTATGTGCCAGAAGGAACGCCGCTTAATGTGCAGCTGGTGAAGTTCCAGCG
CAATAAAGAGAAGGTGGGCATCATCGTCAATGAGTACGGCGATATCCAGGGGCTGGTGACGGTGGAAGATATTCTTGAGG
AGATCGTGGGAGATTTCACAACCTCCATGTCCCCGAGCCTGGCGGAAGAAGTCATTCCGCAAAGCGACGGTTCGGTGATT
ATCGAGGGCGGCGCCAGTATCCGGGAGTTGAACAAGGCGTTTAACTGGTCGCTACCGGAAGAGGAAGCGCGCACTATCAA
CGGCATGCTGCTGGAGGTGCTGGAGGATATTCCGCTAGCCAATACCCATACGCATATCGGCAGCTATCAAATTGATATTC
TGGATGTGCAGGACAATATGATAAAGCAGGTGCGCATCACCCCTATCAAACCGTTAAAGCAGGGCGTCGACGGCAAATAA

Upstream 100 bases:

>100_bases
AAAGCCCACTTTGGAACATGTTTCAACCAGTACACTGCTGATCATCCTTATTATCATGGTATTGGTTTCCGCCTATTTTT
CCGCTTCCGAAACCGGCATG

Downstream 100 bases:

>100_bases
ACGCGCCGTCTGCGCAGAGCCACGCCGTTGCACAGGCTTTGCAGGGCGCATGAGACCGTAACGGGTAATCTCTCGCGAGC
AGAAACTAAAAAAGCTCACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTLNRYRLRHQAKQGNRGARRVEKLLRRTDQLLSLVLIGNNLVNILASALATIVGMRLYGDLGVAIATGVLTFVVLLFAE
VLPKTVAALYPERIAFPSSLLLVPLQKLMLPIVWLLNLITRLLMRLMGIRLPSNVRDALSKEELRTIVTESHSMISRRNQ
DMLISVLDLEKVTVNDIMVPRNEIVGINVNDEWRSIIRQLTHSPHGRIVLYRDNLDDAIGMLRVREAYRLMTEKQEFTKE
NLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIIVNEYGDIQGLVTVEDILEEIVGDFTTSMSPSLAEEVIPQSDGSVI
IEGGASIRELNKAFNWSLPEEEARTINGMLLEVLEDIPLANTHTHIGSYQIDILDVQDNMIKQVRITPIKPLKQGVDGK

Sequences:

>Translated_399_residues
MTLNRYRLRHQAKQGNRGARRVEKLLRRTDQLLSLVLIGNNLVNILASALATIVGMRLYGDLGVAIATGVLTFVVLLFAE
VLPKTVAALYPERIAFPSSLLLVPLQKLMLPIVWLLNLITRLLMRLMGIRLPSNVRDALSKEELRTIVTESHSMISRRNQ
DMLISVLDLEKVTVNDIMVPRNEIVGINVNDEWRSIIRQLTHSPHGRIVLYRDNLDDAIGMLRVREAYRLMTEKQEFTKE
NLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIIVNEYGDIQGLVTVEDILEEIVGDFTTSMSPSLAEEVIPQSDGSVI
IEGGASIRELNKAFNWSLPEEEARTINGMLLEVLEDIPLANTHTHIGSYQIDILDVQDNMIKQVRITPIKPLKQGVDGK
>Mature_398_residues
TLNRYRLRHQAKQGNRGARRVEKLLRRTDQLLSLVLIGNNLVNILASALATIVGMRLYGDLGVAIATGVLTFVVLLFAEV
LPKTVAALYPERIAFPSSLLLVPLQKLMLPIVWLLNLITRLLMRLMGIRLPSNVRDALSKEELRTIVTESHSMISRRNQD
MLISVLDLEKVTVNDIMVPRNEIVGINVNDEWRSIIRQLTHSPHGRIVLYRDNLDDAIGMLRVREAYRLMTEKQEFTKEN
LLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIIVNEYGDIQGLVTVEDILEEIVGDFTTSMSPSLAEEVIPQSDGSVII
EGGASIRELNKAFNWSLPEEEARTINGMLLEVLEDIPLANTHTHIGSYQIDILDVQDNMIKQVRITPIKPLKQGVDGK

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=383, Percent_Identity=25.5874673629243, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI94681046, Length=292, Percent_Identity=24.3150684931507, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI145693175, Length=396, Percent_Identity=78.030303030303, Blast_Score=650, Evalue=0.0,
Organism=Escherichia coli, GI1790664, Length=406, Percent_Identity=21.4285714285714, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786879, Length=250, Percent_Identity=26.4, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI87082033, Length=231, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788119, Length=272, Percent_Identity=27.9411764705882, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 45022; Mature: 44891

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNRYRLRHQAKQGNRGARRVEKLLRRTDQLLSLVLIGNNLVNILASALATIVGMRLYG
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
DLGVAIATGVLTFVVLLFAEVLPKTVAALYPERIAFPSSLLLVPLQKLMLPIVWLLNLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RLLMRLMGIRLPSNVRDALSKEELRTIVTESHSMISRRNQDMLISVLDLEKVTVNDIMVP
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHEEHHHEEEC
RNEIVGINVNDEWRSIIRQLTHSPHGRIVLYRDNLDDAIGMLRVREAYRLMTEKQEFTKE
CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
NLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIIVNEYGDIQGLVTVEDILEEIVGDFT
HHHHHHHHEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHH
TSMSPSLAEEVIPQSDGSVIIEGGASIRELNKAFNWSLPEEEARTINGMLLEVLEDIPLA
CCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
NTHTHIGSYQIDILDVQDNMIKQVRITPIKPLKQGVDGK
CCCCCCCCEEEEEEECCHHHHHHEECCCCHHHHCCCCCC
>Mature Secondary Structure 
TLNRYRLRHQAKQGNRGARRVEKLLRRTDQLLSLVLIGNNLVNILASALATIVGMRLYG
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
DLGVAIATGVLTFVVLLFAEVLPKTVAALYPERIAFPSSLLLVPLQKLMLPIVWLLNLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RLLMRLMGIRLPSNVRDALSKEELRTIVTESHSMISRRNQDMLISVLDLEKVTVNDIMVP
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHEEHHHEEEC
RNEIVGINVNDEWRSIIRQLTHSPHGRIVLYRDNLDDAIGMLRVREAYRLMTEKQEFTKE
CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
NLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVGIIVNEYGDIQGLVTVEDILEEIVGDFT
HHHHHHHHEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEHHHHHHHHHHHHH
TSMSPSLAEEVIPQSDGSVIIEGGASIRELNKAFNWSLPEEEARTINGMLLEVLEDIPLA
CCCCHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
NTHTHIGSYQIDILDVQDNMIKQVRITPIKPLKQGVDGK
CCCCCCCCEEEEEEECCHHHHHHEECCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]