Click here to switch to the map view.

The map label for this gene is ttuB [H]

Identifier: 84626015

GI number: 84626015

Start: 4921173

End: 4922540

Strand: Reverse

Name: ttuB [H]

Synonym: XOO_4358

Alternate gene names: 84626015

Gene position: 4922540-4921173 (Counterclockwise)

Preceding gene: 84626016

Following gene: 84626014

Centisome position: 99.64

GC content: 67.32

Gene sequence:

>1368_bases
ATGGTGCCGGTGCCAAGACACTGGGGCCGGCTGGCCCACCGACTGCTGGAGCGTGCGATGACCCAAGCCACCCGGCCCCT
GCCACCCCCCGATGGCATGGGCCCCACCTACCGCAAGATCCTGTGGCGGCTGATCCCGTTCCTGTTCGTCTGCAATCTGT
TCAATTACCTGGACCGGGTCAACGTCGGCTTCGCCAAGCTGCAGATGCTGCGCGATCTGGGCATGAGCCAGACCGTGTAC
GGGCTGGGCGCGGGGATCTTCTTCATCGGTTACCTCGCTTGCGGGGTGCCCAGTAATCTGATCCTGCAGCGCATTGGCGC
CCGGCGCTGGGTGGCGATCATGATGGTCAGCTGGGGCCTGCTGTCCACCTGCCTGCTGTTCGTGCGCACCCCGGCCGGGT
TCTACACGCTGCGCCTGCTCACCGGTGCGGCCGAGGCGGGCTTCTTCCCCGGCATCTTGCTGTACCTGACGCGCTGGTTT
CCGCGTGACCGGCATGGCCGGGTCACGACCGTCTTCATGTCGGCGATCCCGATCTCCGGGGTGCTGGGGGGGCCGCTGTC
GGGCTGGATCCTGGGCTATTTCTCGGCCGGGCAGGGCGGGCTGGCCGGCTGGCAATGGATGTTCCTGCTGCAGGGCCTGC
CGACCGTGTTGCTGGGCAACGGAGTGTGGTTCCTGCTCAGCGACGGCGTGCAAGAAGCGAGCTGGCTCAACCCGCAGGAA
AAACAGGCCTTGGCCCGCGTACTGGCCGACGACGAAGCAGGCAAGCCGGCCGGTGCGTCCACCTCGCTGCGCGCGGTGCT
GTGCAACCCGGCGGTGTGGCTGCTGGGCACGGTGTACTTCTGCATTCAGAGCGGGGTGTATGCGATCAACTTCTGGCTGC
CTTCGATCATCCAGGACAGCGGCGTCACCGACCCGGTCCGCATCGGTCTGATGAGCGCGATCCCGTACTTGGCGGCGGCA
GTGTTCATGGTGCTGATGGGCCGCTCGGCCGACCGCCGCGGCGAGCGTCGCTGGCATCTGGTGATTCCGTTGCTGATGGG
CGCGGCCGGCCTGTGCATCGCCGCCAGCGTCACCGACAACCTGGGCTTGGCCTTGTTCGGTATGACCCTGGCCACGATGG
GGGCAGTCAGCGGCTTGCCGCTGTTCTGGCCGCTGACCAACGGCTTTCTCACCGCCGCTGCCGCGGCCGGTGGGCTGGCG
CTGATCAATTCCACCGGCCAGGTCGCTGGCTTCGTCAGCCCCTATCTGGTGGGCTGGATCAAGGACACCACCCACAGCAC
CCAACTGGCGCTGTACGTGCTGGCCGGCGCCATGCTGCTGGGCGCCGCGTTGGTGTTGCGGGTGCCGGCGTGCGCGGTGA
ACCAGTGA

Upstream 100 bases:

>100_bases
GGACATTTGCATAAAAAGCGGATTGCACTTTCGCACGCACAGGCAACATCCCGACGACGATTCCGTCAAAACGCTCACTC
TAGAATGCGTCGACCCCCAG

Downstream 100 bases:

>100_bases
TGCGTCCGTCCAAGCGCGTGTCCCCATGAAGGTCGTCATTGCTCCCGATTCGTACAAGGAAAGCCTGTCTGCGCTGGAAG
TCGCGACGCAGATCGAGGCG

Product: MFS transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MVPVPRHWGRLAHRLLERAMTQATRPLPPPDGMGPTYRKILWRLIPFLFVCNLFNYLDRVNVGFAKLQMLRDLGMSQTVY
GLGAGIFFIGYLACGVPSNLILQRIGARRWVAIMMVSWGLLSTCLLFVRTPAGFYTLRLLTGAAEAGFFPGILLYLTRWF
PRDRHGRVTTVFMSAIPISGVLGGPLSGWILGYFSAGQGGLAGWQWMFLLQGLPTVLLGNGVWFLLSDGVQEASWLNPQE
KQALARVLADDEAGKPAGASTSLRAVLCNPAVWLLGTVYFCIQSGVYAINFWLPSIIQDSGVTDPVRIGLMSAIPYLAAA
VFMVLMGRSADRRGERRWHLVIPLLMGAAGLCIAASVTDNLGLALFGMTLATMGAVSGLPLFWPLTNGFLTAAAAAGGLA
LINSTGQVAGFVSPYLVGWIKDTTHSTQLALYVLAGAMLLGAALVLRVPACAVNQ

Sequences:

>Translated_455_residues
MVPVPRHWGRLAHRLLERAMTQATRPLPPPDGMGPTYRKILWRLIPFLFVCNLFNYLDRVNVGFAKLQMLRDLGMSQTVY
GLGAGIFFIGYLACGVPSNLILQRIGARRWVAIMMVSWGLLSTCLLFVRTPAGFYTLRLLTGAAEAGFFPGILLYLTRWF
PRDRHGRVTTVFMSAIPISGVLGGPLSGWILGYFSAGQGGLAGWQWMFLLQGLPTVLLGNGVWFLLSDGVQEASWLNPQE
KQALARVLADDEAGKPAGASTSLRAVLCNPAVWLLGTVYFCIQSGVYAINFWLPSIIQDSGVTDPVRIGLMSAIPYLAAA
VFMVLMGRSADRRGERRWHLVIPLLMGAAGLCIAASVTDNLGLALFGMTLATMGAVSGLPLFWPLTNGFLTAAAAAGGLA
LINSTGQVAGFVSPYLVGWIKDTTHSTQLALYVLAGAMLLGAALVLRVPACAVNQ
>Mature_455_residues
MVPVPRHWGRLAHRLLERAMTQATRPLPPPDGMGPTYRKILWRLIPFLFVCNLFNYLDRVNVGFAKLQMLRDLGMSQTVY
GLGAGIFFIGYLACGVPSNLILQRIGARRWVAIMMVSWGLLSTCLLFVRTPAGFYTLRLLTGAAEAGFFPGILLYLTRWF
PRDRHGRVTTVFMSAIPISGVLGGPLSGWILGYFSAGQGGLAGWQWMFLLQGLPTVLLGNGVWFLLSDGVQEASWLNPQE
KQALARVLADDEAGKPAGASTSLRAVLCNPAVWLLGTVYFCIQSGVYAINFWLPSIIQDSGVTDPVRIGLMSAIPYLAAA
VFMVLMGRSADRRGERRWHLVIPLLMGAAGLCIAASVTDNLGLALFGMTLATMGAVSGLPLFWPLTNGFLTAAAAAGGLA
LINSTGQVAGFVSPYLVGWIKDTTHSTQLALYVLAGAMLLGAALVLRVPACAVNQ

Specific function: Component of the tartrate utilization system and may allow entry of tartrate and tartrate dehydrogenase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI6912666, Length=385, Percent_Identity=23.1168831168831, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87082071, Length=414, Percent_Identity=35.7487922705314, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI2367379, Length=435, Percent_Identity=25.5172413793103, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1789515, Length=426, Percent_Identity=24.4131455399061, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1789152, Length=420, Percent_Identity=24.2857142857143, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082320, Length=448, Percent_Identity=23.6607142857143, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17552542, Length=376, Percent_Identity=26.3297872340426, Blast_Score=72, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6322025, Length=218, Percent_Identity=26.605504587156, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6321698, Length=387, Percent_Identity=22.9974160206718, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6319876, Length=261, Percent_Identity=25.6704980842912, Blast_Score=73, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6322612, Length=257, Percent_Identity=24.5136186770428, Blast_Score=63, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24584153, Length=371, Percent_Identity=25.3369272237197, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24583789, Length=369, Percent_Identity=23.8482384823848, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004744
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49046; Mature: 49046

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVPRHWGRLAHRLLERAMTQATRPLPPPDGMGPTYRKILWRLIPFLFVCNLFNYLDRV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NVGFAKLQMLRDLGMSQTVYGLGAGIFFIGYLACGVPSNLILQRIGARRWVAIMMVSWGL
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHH
LSTCLLFVRTPAGFYTLRLLTGAAEAGFFPGILLYLTRWFPRDRHGRVTTVFMSAIPISG
HHHHHHHHCCCCCHHHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCC
VLGGPLSGWILGYFSAGQGGLAGWQWMFLLQGLPTVLLGNGVWFLLSDGVQEASWLNPQE
CCCCCHHHHHHEEEECCCCCCHHHHHHHHHHCCCCEECCCCEEEEECCCCHHHHCCCHHH
KQALARVLADDEAGKPAGASTSLRAVLCNPAVWLLGTVYFCIQSGVYAINFWLPSIIQDS
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
GVTDPVRIGLMSAIPYLAAAVFMVLMGRSADRRGERRWHLVIPLLMGAAGLCIAASVTDN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHCCCHHEEEEHHCCC
LGLALFGMTLATMGAVSGLPLFWPLTNGFLTAAAAAGGLALINSTGQVAGFVSPYLVGWI
CHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
KDTTHSTQLALYVLAGAMLLGAALVLRVPACAVNQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MVPVPRHWGRLAHRLLERAMTQATRPLPPPDGMGPTYRKILWRLIPFLFVCNLFNYLDRV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
NVGFAKLQMLRDLGMSQTVYGLGAGIFFIGYLACGVPSNLILQRIGARRWVAIMMVSWGL
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHH
LSTCLLFVRTPAGFYTLRLLTGAAEAGFFPGILLYLTRWFPRDRHGRVTTVFMSAIPISG
HHHHHHHHCCCCCHHHHHHHHHCHHCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCCC
VLGGPLSGWILGYFSAGQGGLAGWQWMFLLQGLPTVLLGNGVWFLLSDGVQEASWLNPQE
CCCCCHHHHHHEEEECCCCCCHHHHHHHHHHCCCCEECCCCEEEEECCCCHHHHCCCHHH
KQALARVLADDEAGKPAGASTSLRAVLCNPAVWLLGTVYFCIQSGVYAINFWLPSIIQDS
HHHHHHHHHCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCC
GVTDPVRIGLMSAIPYLAAAVFMVLMGRSADRRGERRWHLVIPLLMGAAGLCIAASVTDN
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHCCCHHEEEEHHCCC
LGLALFGMTLATMGAVSGLPLFWPLTNGFLTAAAAAGGLALINSTGQVAGFVSPYLVGWI
CHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
KDTTHSTQLALYVLAGAMLLGAALVLRVPACAVNQ
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7592429 [H]