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The map label for this gene is 84625973

Identifier: 84625973

GI number: 84625973

Start: 4877989

End: 4879116

Strand: Reverse

Name: 84625973

Synonym: XOO_4316

Alternate gene names: NA

Gene position: 4879116-4877989 (Counterclockwise)

Preceding gene: 84625974

Following gene: 84625971

Centisome position: 98.76

GC content: 63.65

Gene sequence:

>1128_bases
ATGCAGAAGAACTTTTTCCCCAGCGCGAGCGCGGTAGCTGAGCGGGATGTCCGCAGCTCGCGCACGGTCATCAAGGGGCG
CGGCACCACCGCCTACGTGCCCGGTCGCTTCTCGGTCACCACCGCCGTCGAGATAGACGATGGTTGGGGCGCGGTCGATG
CCGATGGCGAGACTGGCATTCGTCCCAAGACCGTGGTGGCCGAAGAAGTCGCACGCAGCATCATCAGCCGCAACACCTCG
CCCGACATCGGGTTCTCGCAGTCGGTGAACCCCTACAGGGGATGTGAGCACGGCTGCGTGTACTGCTTTGCCAGGCCCTC
GCACGCGTATCTGGATCTGTCGCCAGGGCTGGATTTCGAAACGCGGATCTTCGTCAAGCCGAATGCGGCAGCGCTGCTGC
GCGCAGAGATCGCACGCCCGTCCTACCAGTGCTCGCCGATCGCGTTGGGGATCAATACCGACGCCTACCAGCCCGCCGAG
CGGCGCCTGCACATTTCCCGGCAATGCCTGGAAGTGCTTGCAGAAGCCCGTCACCCGGTCAGCTTCGTGACCAAGGCAGC
GTTGATCGAACGCGACATCGATGTGCTGGCCGAGATGGCGCAGCACAACCTGGTGTCGGTGTATTTCTCGGTCACCACGC
TCGACAATCGCCTCGCGGCCAAGATGGAGCCTCGTGCCGCCGCGCCGCATGCGCGACTGCGCGCGATGCAGGCACTACAC
ACTGCCGGCGTACCGGTGGGGGTGCTGGTCGCTCCGGTCATCCCGATGATCAACGACAAGGAACTGGAGCGCATTCTGGA
CGCGGCCGCAGCCCACGGCGCACGTTCGGGCGGCTACGTGTTACTGCGCCTGCCGCAGGAACTCACCCAGTTATGGCGCG
AGTGGCTCGAGCTGCACTATCCGGATCGTGCCAAGCATGTCATGAGCCTGATCCAGCAGATGCGTGGCGGTAAGGACTAC
GACAGCGGCTTCGGTAAGCGCATGGTTGGCGAAGGCCCGTTTGCAGAGCTGATCGCGCAGCGGTTTTCCATCGCGTATCG
GCGCCTTGGATTCGGGCGATTGCCAAGGCTCGATACCACGCAGTTCCGTCCACCCAGACCGGACACGCCGCAGCTTACTC
TTTTCTAA

Upstream 100 bases:

>100_bases
GTTGCGACTGCGCCCTGTACCGGCTCGCAACGCTTGTGCTCGCTCTTCAGTTCAGTACGCGTCGCTTGCATCGCGCATCG
TTAGTAAGAATACTAACTGC

Downstream 100 bases:

>100_bases
TTTTTCTGTGCGGTTTGCGATGCCAGTTCGACTCCGGCTCAGAATCGCAGTGTCTCCTATCGTGATGCGGAGATAGGCGG
GTATTCCGACGTCGGGGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQKNFFPSASAVAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGAVDADGETGIRPKTVVAEEVARSIISRNTS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFVKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAE
RRLHISRQCLEVLAEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
TAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSGGYVLLRLPQELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSGFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLTLF

Sequences:

>Translated_375_residues
MQKNFFPSASAVAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGAVDADGETGIRPKTVVAEEVARSIISRNTS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFVKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAE
RRLHISRQCLEVLAEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
TAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSGGYVLLRLPQELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSGFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLTLF
>Mature_375_residues
MQKNFFPSASAVAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGAVDADGETGIRPKTVVAEEVARSIISRNTS
PDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFETRIFVKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAE
RRLHISRQCLEVLAEARHPVSFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
TAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSGGYVLLRLPQELTQLWREWLELHYPDRAKHVMSLIQQMRGGKDY
DSGFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTTQFRPPRPDTPQLTLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 41504; Mature: 41504

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNFFPSASAVAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGAVDADGETGI
CCCCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCC
RPKTVVAEEVARSIISRNTSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCEEECCCCCCCC
TRIFVKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLHISRQCLEVLAEARHPV
EEEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
SFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHCHHHHHCCCCCCCCCHHHHHHHHHHH
TAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSGGYVLLRLPQELTQLWREWLELHY
HCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCC
PDRAKHVMSLIQQMRGGKDYDSGFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTT
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QFRPPRPDTPQLTLF
CCCCCCCCCCCEEEC
>Mature Secondary Structure
MQKNFFPSASAVAERDVRSSRTVIKGRGTTAYVPGRFSVTTAVEIDDGWGAVDADGETGI
CCCCCCCCHHHHHHHHHHHCCCEEECCCCEEEECCCEEEEEEEEECCCCCCCCCCCCCCC
RPKTVVAEEVARSIISRNTSPDIGFSQSVNPYRGCEHGCVYCFARPSHAYLDLSPGLDFE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEEEEECCCCCEEECCCCCCCC
TRIFVKPNAAALLRAEIARPSYQCSPIALGINTDAYQPAERRLHISRQCLEVLAEARHPV
EEEEECCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
SFVTKAALIERDIDVLAEMAQHNLVSVYFSVTTLDNRLAAKMEPRAAAPHARLRAMQALH
HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEHHCHHHHHCCCCCCCCCHHHHHHHHHHH
TAGVPVGVLVAPVIPMINDKELERILDAAAAHGARSGGYVLLRLPQELTQLWREWLELHY
HCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCC
PDRAKHVMSLIQQMRGGKDYDSGFGKRMVGEGPFAELIAQRFSIAYRRLGFGRLPRLDTT
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QFRPPRPDTPQLTLF
CCCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]