| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84625932
Identifier: 84625932
GI number: 84625932
Start: 4833189
End: 4834061
Strand: Reverse
Name: 84625932
Synonym: XOO_4275
Alternate gene names: NA
Gene position: 4834061-4833189 (Counterclockwise)
Preceding gene: 84625933
Following gene: 84625931
Centisome position: 97.85
GC content: 67.35
Gene sequence:
>873_bases GTGAGCCGGGTCGACGCGCACCTGCATTTCTGGCGCCTGGCCCGTGGCGATTATCACTGGCTGACGCCCGAACTGGCGCC GCTGTACCGCGACTTCGGTCCGGATGACATTGGCGCTGCGCTGGACGCCGCCGATGTCGATCGCGTCGTGGTGGTGCAGG CTGCCGCCACCGAGGCAGAAACCTGTTACCTGTTCGAGCTGGCCCGCGACGATGCGCGCATTGCCGGCGTCGTCGGTTGG GTCGATTTTGCTGCGCCCGATGCCGCAGCACGCATCGGCGCATTGGTGCGTGCCGGCGGCGGCGTGCTCAAGGGTCTGCG CCCGATGGTGCAGGACATCGCCGACGTGCACTGGCTAGCCGATCCCGCGCTGGATGCCGCCTTCGATGCACTACTTGCGC ACGATCTGGCCTTTGACGCCTTGATCCGCGCCGCGCATGTACCGGCACTGCAGGCGCGCTTGAAGCGCCATCCGGGGTTG CGCGTGGTGGTCGATCACGGTGGCAAGCCGCAGATTGCCACTGGCGAGTTCGTCGCCTGGGCTGCCAGCATGGCTGTTCT GGCGCAGCATCCCAATGTGCATTGCAAACTCTCCGGCTTGCTGACCGAAGCCGCGCGCGGCGCTGGCGTGGACGCGCTGG CGCCGTACGTCGCGCACCTGTTCGCCCGTTTCGGCCCGCAGCGGCTGCTGTGGGGCAGTGATTGGCCCGTGCTGAGCTTG CGCGCCGATTACGCGCACTGGTTTGCACTCGCACAGCAACTCGTCACCCGGCATGCCGCCGAGCACGCGGCAGCCATCTT CGGCGACAACGCACGCACGTTCTATCGTCTGCCACGGCCGGCGGCCCCCACCTACGGAACCTCATCACTATGA
Upstream 100 bases:
>100_bases AAGTGCAATCGGCGGCCACGCGGCTTGCGGCCCCGGTGCCATCCGCACTGTGGCAACGCCTGCGCGATGAGGGCCTGCTC GCAGCGGAGTTGCCCACCCC
Downstream 100 bases:
>100_bases CTGTCTCGATCTTCACCACACCCAACACCCGCCTGCAGGGCAAGCGCTGCCTGATTACCGCCGCCGGCGCCGGCATCGGG CGCGAAAGTGCACTGGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 290; Mature: 289
Protein sequence:
>290_residues MSRVDAHLHFWRLARGDYHWLTPELAPLYRDFGPDDIGAALDAADVDRVVVVQAAATEAETCYLFELARDDARIAGVVGW VDFAAPDAAARIGALVRAGGGVLKGLRPMVQDIADVHWLADPALDAAFDALLAHDLAFDALIRAAHVPALQARLKRHPGL RVVVDHGGKPQIATGEFVAWAASMAVLAQHPNVHCKLSGLLTEAARGAGVDALAPYVAHLFARFGPQRLLWGSDWPVLSL RADYAHWFALAQQLVTRHAAEHAAAIFGDNARTFYRLPRPAAPTYGTSSL
Sequences:
>Translated_290_residues MSRVDAHLHFWRLARGDYHWLTPELAPLYRDFGPDDIGAALDAADVDRVVVVQAAATEAETCYLFELARDDARIAGVVGW VDFAAPDAAARIGALVRAGGGVLKGLRPMVQDIADVHWLADPALDAAFDALLAHDLAFDALIRAAHVPALQARLKRHPGL RVVVDHGGKPQIATGEFVAWAASMAVLAQHPNVHCKLSGLLTEAARGAGVDALAPYVAHLFARFGPQRLLWGSDWPVLSL RADYAHWFALAQQLVTRHAAEHAAAIFGDNARTFYRLPRPAAPTYGTSSL >Mature_289_residues SRVDAHLHFWRLARGDYHWLTPELAPLYRDFGPDDIGAALDAADVDRVVVVQAAATEAETCYLFELARDDARIAGVVGWV DFAAPDAAARIGALVRAGGGVLKGLRPMVQDIADVHWLADPALDAAFDALLAHDLAFDALIRAAHVPALQARLKRHPGLR VVVDHGGKPQIATGEFVAWAASMAVLAQHPNVHCKLSGLLTEAARGAGVDALAPYVAHLFARFGPQRLLWGSDWPVLSLR ADYAHWFALAQQLVTRHAAEHAAAIFGDNARTFYRLPRPAAPTYGTSSL
Specific function: Unknown
COG id: COG3618
COG function: function code R; Predicted metal-dependent hydrolase of the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006992 [H]
Pfam domain/function: PF04909 Amidohydro_2 [H]
EC number: NA
Molecular weight: Translated: 31288; Mature: 31157
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVDAHLHFWRLARGDYHWLTPELAPLYRDFGPDDIGAALDAADVDRVVVVQAAATEAE CCCCHHHHHHHHHHCCCCEECCCHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEECCCCCC TCYLFELARDDARIAGVVGWVDFAAPDAAARIGALVRAGGGVLKGLRPMVQDIADVHWLA EEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DPALDAAFDALLAHDLAFDALIRAAHVPALQARLKRHPGLRVVVDHGGKPQIATGEFVAW CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH AASMAVLAQHPNVHCKLSGLLTEAARGAGVDALAPYVAHLFARFGPQRLLWGSDWPVLSL HHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEE RADYAHWFALAQQLVTRHAAEHAAAIFGDNARTFYRLPRPAAPTYGTSSL EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure SRVDAHLHFWRLARGDYHWLTPELAPLYRDFGPDDIGAALDAADVDRVVVVQAAATEAE CCCHHHHHHHHHHCCCCEECCCHHHHHHHCCCCCHHHHHCCCCCCCEEEEEEECCCCCC TCYLFELARDDARIAGVVGWVDFAAPDAAARIGALVRAGGGVLKGLRPMVQDIADVHWLA EEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH DPALDAAFDALLAHDLAFDALIRAAHVPALQARLKRHPGLRVVVDHGGKPQIATGEFVAW CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH AASMAVLAQHPNVHCKLSGLLTEAARGAGVDALAPYVAHLFARFGPQRLLWGSDWPVLSL HHHHHHHHCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEE RADYAHWFALAQQLVTRHAAEHAAAIFGDNARTFYRLPRPAAPTYGTSSL EHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]