| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is yehS [H]
Identifier: 84625928
GI number: 84625928
Start: 4828765
End: 4829238
Strand: Reverse
Name: yehS [H]
Synonym: XOO_4271
Alternate gene names: 84625928
Gene position: 4829238-4828765 (Counterclockwise)
Preceding gene: 84625929
Following gene: 84625927
Centisome position: 97.75
GC content: 64.77
Gene sequence:
>474_bases ATGATCCACAACGATGTACTGCGCAGCATCCGCTACATGCTCGACCTCAGCGACGACAAGGTGGTGGACATCACCCACCT GGCCGACCCCGAGTTCGCGCTCGACAAGGCGCAGGTACAGGCCTGGCTGAAAAAGGAAGACGCGCCTGGTTTCGAGCCCT GCACCGATGCGATGCTGGCGCGCTTTCTCGACGGCCTGGTGCTGCGCTTCCGCGGCCGCGACGAGAGCCAACCGGTCCGC CCGCTGGAAACCCGCGTCGGCAACAACCTGGTGTTGAAGAAGCTGCGCGTGGCCTTCGAACTGAAGGACGTCGACATGCA CGCCATCTTCGCCAGCGCCGGCTTCCCGCTGTCCAAGCCGGAACTCTCCGCGCTGTTCCGCCAACCCGGCCACAAGAACT TCCGCCCCTGCGGCGACCAACTGCTGCGCGCCTTTCTCAAAGGCCTGACCTCCCGGATGCGCGAAGCCGGTTGA
Upstream 100 bases:
>100_bases GCCGGCGCGAGGGACTCGCTGCGCACGGTGTCAGGTCGGTTTCACTCAAGCTCCGTAGAATGGCCGCTTTCCGGCGACAG GCCGGGGCACCGGAACGGTC
Downstream 100 bases:
>100_bases AGCCTGGGTGATCAGATCGACCTGATTCGGCCGGTCTGAGGACACCACGACGCGGCGTCCTGCTGCTTCAACAAACCACC AGCAAACTGTCTGGTGACGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 157; Mature: 157
Protein sequence:
>157_residues MIHNDVLRSIRYMLDLSDDKVVDITHLADPEFALDKAQVQAWLKKEDAPGFEPCTDAMLARFLDGLVLRFRGRDESQPVR PLETRVGNNLVLKKLRVAFELKDVDMHAIFASAGFPLSKPELSALFRQPGHKNFRPCGDQLLRAFLKGLTSRMREAG
Sequences:
>Translated_157_residues MIHNDVLRSIRYMLDLSDDKVVDITHLADPEFALDKAQVQAWLKKEDAPGFEPCTDAMLARFLDGLVLRFRGRDESQPVR PLETRVGNNLVLKKLRVAFELKDVDMHAIFASAGFPLSKPELSALFRQPGHKNFRPCGDQLLRAFLKGLTSRMREAG >Mature_157_residues MIHNDVLRSIRYMLDLSDDKVVDITHLADPEFALDKAQVQAWLKKEDAPGFEPCTDAMLARFLDGLVLRFRGRDESQPVR PLETRVGNNLVLKKLRVAFELKDVDMHAIFASAGFPLSKPELSALFRQPGHKNFRPCGDQLLRAFLKGLTSRMREAG
Specific function: Unknown
COG id: COG4807
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788443, Length=152, Percent_Identity=48.6842105263158, Blast_Score=155, Evalue=1e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009921 [H]
Pfam domain/function: PF07308 DUF1456 [H]
EC number: NA
Molecular weight: Translated: 17790; Mature: 17790
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHNDVLRSIRYMLDLSDDKVVDITHLADPEFALDKAQVQAWLKKEDAPGFEPCTDAMLA CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RFLDGLVLRFRGRDESQPVRPLETRVGNNLVLKKLRVAFELKDVDMHAIFASAGFPLSKP HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCH ELSALFRQPGHKNFRPCGDQLLRAFLKGLTSRMREAG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIHNDVLRSIRYMLDLSDDKVVDITHLADPEFALDKAQVQAWLKKEDAPGFEPCTDAMLA CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH RFLDGLVLRFRGRDESQPVRPLETRVGNNLVLKKLRVAFELKDVDMHAIFASAGFPLSKP HHHHHHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCH ELSALFRQPGHKNFRPCGDQLLRAFLKGLTSRMREAG HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]