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The map label for this gene is xynB [H]

Identifier: 84625828

GI number: 84625828

Start: 4716259

End: 4717236

Strand: Reverse

Name: xynB [H]

Synonym: XOO_4171

Alternate gene names: 84625828

Gene position: 4717236-4716259 (Counterclockwise)

Preceding gene: 84625829

Following gene: 84625827

Centisome position: 95.49

GC content: 61.45

Gene sequence:

>978_bases
ATGTTGAAACTCCGTTACCCGCTCACGCTTGTGCTGTTGCTGGGCGCTTGTGCGTCCGCTGTTGCCGGGCCTATCGCTGC
CGGCAAACGACGCGTTCTGGGCAGCGCCTACAGCCCACAGCAAGCGCAGGGCTTCACCAACTACTGGAACGCCGACGTTC
CCGAAAATGCCGGCAAATGGGGCAGCGTCGAAGCCGTGCGCGGCCAGATGAACTGGGGCCCGCTCGACGAGGCTTACCAG
CTGGCCAAGCGTAACCATATGCAGTTCCAGTTCCATGTCGGGCTCTGGGGCTCGCAGCAGCCGACGTGGGTACGCGACCT
GCCGCCGAATGAACAGCGTGCTGCAATCGAGCACTGGTTCGCCGCCATCGCGCAGCGCTATCCCGATATCGATTTGATGC
AGGTGGCCAATGAGACGCTGCCGGGTCACAACCAGCCGGACAATCGCCGCGCCGATTCGGGCAATTACATGCGGGCACTG
GGCGGTACCGGGGCGACCGGCGTGGACTGGGTGCTTGAGGCATTCCGCCTGGCACGCAAGTATTTCCCCCATACCAAGTT
GATGATCAACGACTACAACGTCACCGAGTACAACGACCAAGCCAGGCAGTATCTGCACACCATCCAGCTGTTGCAGCAAG
AACATCTGATCGATGCGATCGGTATCCAGGGGCACCTCTCGAGCAACGGCCCCTCAGTTGCGGTGCAGCGCGCCAACCTC
GACCTGCTGGCATCCACCAGGTTGCCGATCTACATCACCGAGTTTGACCTGGATGGCCGTACCGATGCCCAGCAGCTGGC
AGCCTGGCAGCGCTTCTTCCCGATGTTCTGGGAGCACCCGGCCGTGCGCGGTGTGAACCTGTGGGGTTTCCGTCACGGTA
TGTGGCGCGACAACGAAGGTGCCTATCTGATTAATTATGATGGCAGCGAACGCCCGGCATTGACCTGGCTACGCAGCTAC
GTTGCCAGCAGGCCATGA

Upstream 100 bases:

>100_bases
GGCAATGGTGCACCGCATGTATCCGACGCACGTCAGCGCACCTGTCCTTTCCGTCACTGCTTCGCTCACTTAGCTTCGCT
CACTTATCGAGGATGCCAAC

Downstream 100 bases:

>100_bases
CCAGGCGCCTTTCCTAACGTCCATTGGGCTGATATCGATCATGCGTTCTTCCGTGTTGTCCTTGCATCCCGATCGTTTGC
TGCCGGCCGATCCCGGCACG

Product: secreted xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MLKLRYPLTLVLLLGACASAVAGPIAAGKRRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEAVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGSQQPTWVRDLPPNEQRAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRADSGNYMRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVAVQRANL
DLLASTRLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGMWRDNEGAYLINYDGSERPALTWLRSY
VASRP

Sequences:

>Translated_325_residues
MLKLRYPLTLVLLLGACASAVAGPIAAGKRRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEAVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGSQQPTWVRDLPPNEQRAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRADSGNYMRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVAVQRANL
DLLASTRLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGMWRDNEGAYLINYDGSERPALTWLRSY
VASRP
>Mature_325_residues
MLKLRYPLTLVLLLGACASAVAGPIAAGKRRVLGSAYSPQQAQGFTNYWNADVPENAGKWGSVEAVRGQMNWGPLDEAYQ
LAKRNHMQFQFHVGLWGSQQPTWVRDLPPNEQRAAIEHWFAAIAQRYPDIDLMQVANETLPGHNQPDNRRADSGNYMRAL
GGTGATGVDWVLEAFRLARKYFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVAVQRANL
DLLASTRLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGMWRDNEGAYLINYDGSERPALTWLRSY
VASRP

Specific function: Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls [H]

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR005084
- InterPro:   IPR012291
- InterPro:   IPR018366
- InterPro:   IPR001919
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00553 CBM_2; PF03422 CBM_6; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 36848; Mature: 36848

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLRYPLTLVLLLGACASAVAGPIAAGKRRVLGSAYSPQQAQGFTNYWNADVPENAGKW
CEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC
GSVEAVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGSQQPTWVRDLPPNEQRAAIEHWF
CCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHHHHH
AAIAQRYPDIDLMQVANETLPGHNQPDNRRADSGNYMRALGGTGATGVDWVLEAFRLARK
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
YFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVAVQRANL
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCC
DLLASTRLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGMWRDNEG
EEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
AYLINYDGSERPALTWLRSYVASRP
CEEEEECCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKLRYPLTLVLLLGACASAVAGPIAAGKRRVLGSAYSPQQAQGFTNYWNADVPENAGKW
CEEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC
GSVEAVRGQMNWGPLDEAYQLAKRNHMQFQFHVGLWGSQQPTWVRDLPPNEQRAAIEHWF
CCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCCCCCHHHHHHHHHH
AAIAQRYPDIDLMQVANETLPGHNQPDNRRADSGNYMRALGGTGATGVDWVLEAFRLARK
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
YFPHTKLMINDYNVTEYNDQARQYLHTIQLLQQEHLIDAIGIQGHLSSNGPSVAVQRANL
HCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCC
DLLASTRLPIYITEFDLDGRTDAQQLAAWQRFFPMFWEHPAVRGVNLWGFRHGMWRDNEG
EEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
AYLINYDGSERPALTWLRSYVASRP
CEEEEECCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2125205 [H]