Click here to switch to the map view.

The map label for this gene is 84625669

Identifier: 84625669

GI number: 84625669

Start: 4522808

End: 4523353

Strand: Reverse

Name: 84625669

Synonym: XOO_4012

Alternate gene names: NA

Gene position: 4523353-4522808 (Counterclockwise)

Preceding gene: 84625670

Following gene: 84625668

Centisome position: 91.56

GC content: 61.9

Gene sequence:

>546_bases
GTGTGGGTCAACCCGGCGGGCGGTTGGAACGACGGCCGCGACACCCTGGACAAGGCCAAGCGTGCCGCCGTGCAAGGCAT
GCGCATCATGATCGACTTCCATTACAGCGATAGCTGGGCCGCCCCCGGCAAACAGACCACACCAGCGGCATGGGCCGGCC
ACTCCGTTGCCCAGCGCAACACCGATGTCTATAGCCATACCCAGGGCATCCTCCAATATCTCAAGGACAACGGCATCACC
GTCAGCTGGGTGCAGGTGGGCAACGAGATCAACAGCGGCATGCTGTGGAACGACGGCACGACGCCCAACTTCGCCACCCT
GGGCCAGTTCATCAACAGCGGCTACGACGCCACCAAGGCGGTGTATCCCAATGCCAAGGTCGTCGTGCATTTGACCAACG
GCTACGACAACGCCAATTTCCGCTGGTTCTTCGACAACCTGCGTTCGGCAGGCGGCAAGTGGGACGTCATCGGCATGTCG
CATTACCCCCCGTCGGCAGCTGGCAGCATTACAACAGCCGCCTGGACACCAACATGCGCGACATGA

Upstream 100 bases:

>100_bases
GCCGCCGCCAATCCGTCGCAGGTTTCGCGATGCAGCGGGCAACACCACCGACTTCATCAAGCTGTTCAAGGATGTCGGCG
GCAACGCGATCCGTCTGCGC

Downstream 100 bases:

>100_bases
TTGCGCGCTACGGCAGTGACGTGGTGATTTCCGAAGTCGGCATGGACTGGCAGCAAGCCGCCACCCCCCGCGCCATGCTC
AGCAACCTGCTCACCCGCAG

Product: truncated arabinogalactan endo-1,4-beta-galactosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MWVNPAGGWNDGRDTLDKAKRAAVQGMRIMIDFHYSDSWAAPGKQTTPAAWAGHSVAQRNTDVYSHTQGILQYLKDNGIT
VSWVQVGNEINSGMLWNDGTTPNFATLGQFINSGYDATKAVYPNAKVVVHLTNGYDNANFRWFFDNLRSAGGKWDVIGMS
HYPPSAAGSITTAAWTPTCAT

Sequences:

>Translated_181_residues
MWVNPAGGWNDGRDTLDKAKRAAVQGMRIMIDFHYSDSWAAPGKQTTPAAWAGHSVAQRNTDVYSHTQGILQYLKDNGIT
VSWVQVGNEINSGMLWNDGTTPNFATLGQFINSGYDATKAVYPNAKVVVHLTNGYDNANFRWFFDNLRSAGGKWDVIGMS
HYPPSAAGSITTAAWTPTCAT
>Mature_181_residues
MWVNPAGGWNDGRDTLDKAKRAAVQGMRIMIDFHYSDSWAAPGKQTTPAAWAGHSVAQRNTDVYSHTQGILQYLKDNGIT
VSWVQVGNEINSGMLWNDGTTPNFATLGQFINSGYDATKAVYPNAKVVVHLTNGYDNANFRWFFDNLRSAGGKWDVIGMS
HYPPSAAGSITTAAWTPTCAT

Specific function: Unknown

COG id: COG3867

COG function: function code G; Arabinogalactan endo-1,4-beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 53 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011683
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07745 Glyco_hydro_53 [H]

EC number: NA

Molecular weight: Translated: 19762; Mature: 19762

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVNPAGGWNDGRDTLDKAKRAAVQGMRIMIDFHYSDSWAAPGKQTTPAAWAGHSVAQRN
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHCCCHHHHCC
TDVYSHTQGILQYLKDNGITVSWVQVGNEINSGMLWNDGTTPNFATLGQFINSGYDATKA
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEE
VYPNAKVVVHLTNGYDNANFRWFFDNLRSAGGKWDVIGMSHYPPSAAGSITTAAWTPTCA
ECCCCEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCC
T
C
>Mature Secondary Structure
MWVNPAGGWNDGRDTLDKAKRAAVQGMRIMIDFHYSDSWAAPGKQTTPAAWAGHSVAQRN
CCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCHHCCCHHHHCC
TDVYSHTQGILQYLKDNGITVSWVQVGNEINSGMLWNDGTTPNFATLGQFINSGYDATKA
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCEE
VYPNAKVVVHLTNGYDNANFRWFFDNLRSAGGKWDVIGMSHYPPSAAGSITTAAWTPTCA
ECCCCEEEEEEECCCCCCCEEEEEHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA