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The map label for this gene is secY [H]

Identifier: 84625024

GI number: 84625024

Start: 3831265

End: 3832629

Strand: Reverse

Name: secY [H]

Synonym: XOO_3367

Alternate gene names: 84625024

Gene position: 3832629-3831265 (Counterclockwise)

Preceding gene: 84625025

Following gene: 84625023

Centisome position: 77.58

GC content: 59.78

Gene sequence:

>1365_bases
ATGGCGCAGGCTGGCATTGGTAACCTCGGTGGCGGGCTCGGCAAGTTCACGGAACTTCGCCAGCGGTTGCTGTTCGTCCT
CGGGGCATTGATCGTTTATCGCATCGGCTGCTATGTGCCGGTGCCTGGCGTGAATCCCGATGCCATGCTTTCGTTGATGC
AGGCGCAGGGCGGCGGCATCGTGGACATGTTCAACATGTTCTCGGGCGGCGCCCTGCACCGCTTCAGTATTTTTGCGTTG
AATGTGATGCCGTACATTTCGGCATCGATCGTGATCCAGTTGGCCACGCACATCTTTCCCGCCCTCAAGGCGATGCAGAA
GGAAGGCGAATCCGGTCGACGCAAGATCACCCAATATTCGCGTATCGGTGCGGTGTTGCTGGCGGTGGTGCAGGGCGGCA
GTATTGCGCTGGCACTGCAGCATCAGACCGCGCCCGGTGGCGCTCCGGTGGTGTATGCGCCGGGCCTGGGTTTCGTGCTC
ACTGCGGTCATTGCGTTGACTGCCGGCACCATCTTCTTGATGTGGGTTGGCGAGCAGGTCACCGAGCGCGGTATCGGTAA
CGGTGTCTCGCTGATCATCTTTGCCGGTATCGTGGCAGGCCTGCCTTCCGCGGCCATGCAGACCGTCGAAGCGTTCCGCG
AAGACAATCTGAGCTTCATTTCGCTGTTGCTGATCGTGATCACGATTCTGGCATTTACCCTGTTCGTGGTGTTCGTCGAG
CGAGGGCAGCGTCGGATTACGGTGAACTACGCGCGCCGTCAGGGCGGTCGCAATGCGTATATGAACCAGGCCTCGTTTCT
GCCGTTGAAGCTCAACATGGCCGGCGTGATTCCGCCGATCTTTGCGTCCAGCATCCTGGCATTCCCGGCGACGTTGTCGA
TGTGGTCGGGTCAGGCGGCATCGGGTGGTATTGGTTCTTGGCTGCAGAAGATCGCCAACGCGCTTGGGCCCGGTGAGCCG
GTCCACATGCTGGTGTTCGCTGCGCTGATTATTGGTTTTGCGTTCTTCTACACCGCGTTGGTGTTCAACTCGCAGGAAAC
CGCCGACAACCTCAAGAAGTCGGGCGCGCTGATTCCGGGCATTCGTCCGGGCAAAGCGACGGCCGATTATGTCGATGGCG
TGCTGACGCGTTTGACCGCTGCCGGTTCTCTGTACCTGGTCATCGTCTGCCTGCTGCCGGAAATCATGCGCACGCAGCTC
GGTACCTCGTTCCACTTCGGTGGCACCTCGCTGTTGATCGCGGTGGTGGTGGTGATGGACTTCATTGCGCAGATTCAGGC
GCATCTGATGTCGCACCAGTATGAGAGCTTGTTGAAGAAGGCCAACCTGAAGGGTGGGTCACGCGGCGGTCTTGCGCGTG
GTTAA

Upstream 100 bases:

>100_bases
GAGCTGAGCAAGAAGTTCGTGCTGAAGGGCGTTGCGGCGACCGCAGGCGCCAAGGCAGCAATCGAAGCTGCCGGCGGCAG
CGTAGAGGAGTAATCGGCAG

Downstream 100 bases:

>100_bases
GTGATACACTAGGTCTTTAGTGCGTGAAGACGGCCTGGTTCCCGGGCGACGATCTTCCGATCAGAAGGGCGGCTCGCGCG
ACGTCTCGCGCGCGGGTGTG

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MAQAGIGNLGGGLGKFTELRQRLLFVLGALIVYRIGCYVPVPGVNPDAMLSLMQAQGGGIVDMFNMFSGGALHRFSIFAL
NVMPYISASIVIQLATHIFPALKAMQKEGESGRRKITQYSRIGAVLLAVVQGGSIALALQHQTAPGGAPVVYAPGLGFVL
TAVIALTAGTIFLMWVGEQVTERGIGNGVSLIIFAGIVAGLPSAAMQTVEAFREDNLSFISLLLIVITILAFTLFVVFVE
RGQRRITVNYARRQGGRNAYMNQASFLPLKLNMAGVIPPIFASSILAFPATLSMWSGQAASGGIGSWLQKIANALGPGEP
VHMLVFAALIIGFAFFYTALVFNSQETADNLKKSGALIPGIRPGKATADYVDGVLTRLTAAGSLYLVIVCLLPEIMRTQL
GTSFHFGGTSLLIAVVVVMDFIAQIQAHLMSHQYESLLKKANLKGGSRGGLARG

Sequences:

>Translated_454_residues
MAQAGIGNLGGGLGKFTELRQRLLFVLGALIVYRIGCYVPVPGVNPDAMLSLMQAQGGGIVDMFNMFSGGALHRFSIFAL
NVMPYISASIVIQLATHIFPALKAMQKEGESGRRKITQYSRIGAVLLAVVQGGSIALALQHQTAPGGAPVVYAPGLGFVL
TAVIALTAGTIFLMWVGEQVTERGIGNGVSLIIFAGIVAGLPSAAMQTVEAFREDNLSFISLLLIVITILAFTLFVVFVE
RGQRRITVNYARRQGGRNAYMNQASFLPLKLNMAGVIPPIFASSILAFPATLSMWSGQAASGGIGSWLQKIANALGPGEP
VHMLVFAALIIGFAFFYTALVFNSQETADNLKKSGALIPGIRPGKATADYVDGVLTRLTAAGSLYLVIVCLLPEIMRTQL
GTSFHFGGTSLLIAVVVVMDFIAQIQAHLMSHQYESLLKKANLKGGSRGGLARG
>Mature_453_residues
AQAGIGNLGGGLGKFTELRQRLLFVLGALIVYRIGCYVPVPGVNPDAMLSLMQAQGGGIVDMFNMFSGGALHRFSIFALN
VMPYISASIVIQLATHIFPALKAMQKEGESGRRKITQYSRIGAVLLAVVQGGSIALALQHQTAPGGAPVVYAPGLGFVLT
AVIALTAGTIFLMWVGEQVTERGIGNGVSLIIFAGIVAGLPSAAMQTVEAFREDNLSFISLLLIVITILAFTLFVVFVER
GQRRITVNYARRQGGRNAYMNQASFLPLKLNMAGVIPPIFASSILAFPATLSMWSGQAASGGIGSWLQKIANALGPGEPV
HMLVFAALIIGFAFFYTALVFNSQETADNLKKSGALIPGIRPGKATADYVDGVLTRLTAAGSLYLVIVCLLPEIMRTQLG
TSFHFGGTSLLIAVVVVMDFIAQIQAHLMSHQYESLLKKANLKGGSRGGLARG

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=439, Percent_Identity=59.9088838268793, Blast_Score=476, Evalue=1e-136,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48047; Mature: 47915

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAGIGNLGGGLGKFTELRQRLLFVLGALIVYRIGCYVPVPGVNPDAMLSLMQAQGGGI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCH
VDMFNMFSGGALHRFSIFALNVMPYISASIVIQLATHIFPALKAMQKEGESGRRKITQYS
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIGAVLLAVVQGGSIALALQHQTAPGGAPVVYAPGLGFVLTAVIALTAGTIFLMWVGEQV
HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEHHHHH
TERGIGNGVSLIIFAGIVAGLPSAAMQTVEAFREDNLSFISLLLIVITILAFTLFVVFVE
HHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RGQRRITVNYARRQGGRNAYMNQASFLPLKLNMAGVIPPIFASSILAFPATLSMWSGQAA
CCCCEEEEEHHHHCCCCCHHCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC
SGGIGSWLQKIANALGPGEPVHMLVFAALIIGFAFFYTALVFNSQETADNLKKSGALIPG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
IRPGKATADYVDGVLTRLTAAGSLYLVIVCLLPEIMRTQLGTSFHFGGTSLLIAVVVVMD
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
FIAQIQAHLMSHQYESLLKKANLKGGSRGGLARG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AQAGIGNLGGGLGKFTELRQRLLFVLGALIVYRIGCYVPVPGVNPDAMLSLMQAQGGGI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCH
VDMFNMFSGGALHRFSIFALNVMPYISASIVIQLATHIFPALKAMQKEGESGRRKITQYS
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RIGAVLLAVVQGGSIALALQHQTAPGGAPVVYAPGLGFVLTAVIALTAGTIFLMWVGEQV
HHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEHHHHH
TERGIGNGVSLIIFAGIVAGLPSAAMQTVEAFREDNLSFISLLLIVITILAFTLFVVFVE
HHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RGQRRITVNYARRQGGRNAYMNQASFLPLKLNMAGVIPPIFASSILAFPATLSMWSGQAA
CCCCEEEEEHHHHCCCCCHHCCCCCCCEEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCC
SGGIGSWLQKIANALGPGEPVHMLVFAALIIGFAFFYTALVFNSQETADNLKKSGALIPG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCC
IRPGKATADYVDGVLTRLTAAGSLYLVIVCLLPEIMRTQLGTSFHFGGTSLLIAVVVVMD
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
FIAQIQAHLMSHQYESLLKKANLKGGSRGGLARG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]