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The map label for this gene is yfjP [H]

Identifier: 84624987

GI number: 84624987

Start: 3792980

End: 3793654

Strand: Reverse

Name: yfjP [H]

Synonym: XOO_3330

Alternate gene names: 84624987

Gene position: 3793654-3792980 (Counterclockwise)

Preceding gene: 84624988

Following gene: 84624982

Centisome position: 76.79

GC content: 67.26

Gene sequence:

>675_bases
ATGCCGCGCCACGCCCGCGGATTCGATGTGGAGGCTGCGTTCGCGCATCTTGCTCGGCGTGACCGCGCGTTGGGCGCGTG
GATGAAGCGCATCGGCGCGATCGCCCCGCAGCCGGGGTGGCGCAAACCGTTTGATCCGGTGGATGCGCTGGCGCGCGCGA
TTCTGTTTCAGCAGCTCAGCGGCAAGGCGGCTTCGACCATCGTGGCGCGGGTGAAAGTGGCGATCGGCGCGCAGCGGCTG
CATGCCGATACGCTCGGTCGCATCGACGATGCAGCACTGCGTGCCTGCGGCGTTTCCGGTAACAAGGCGCTGGCCCTGCG
CGATCTGGTGCGGCGCGAAAGCGCAGGTGAGATACCGTCGCTACGCAGGCTCGCTTTCATGGAGGACAACGCCATCGTCG
ACGCGCTGGTGCCGGTGCGCGGCATCGGCCGCTGGACGGTGGAGATGATGCTGATGTTCCGCCTGGGCCGCCCGGATCTG
CTGCCCATCGACGACCTGGGCGTGCGCAAAGGTGCGCAGCGCGTGGACAAGCAGGAGCATATGCCCACCCCCAAGGAGCT
GGCCGTTCGTGGCGAACGCTGGGGCCCATACCGCACCTACGCCGCGTTCTATCTGTGGAAAATCGCCGACTTCAGCGTGG
CGACGAACGTGCCGACACCGCGTTCGCAGGAGTAG

Upstream 100 bases:

>100_bases
GTGCGTTGCTGCATTGGCCGACCAGCCTGGCGCCGATTGGCGGGAGTGGCCTGATGCTGGGCTGGGTGGTGCTGGCCATC
GGCGCCTTGAGACACTGAGC

Downstream 100 bases:

>100_bases
CGCGCTCGCACGCGGGGCCGACGCGACGGTCGGTTGTGTCGCGTCGCATGAGGTGCCGCCGACTTACGCTGCCGACCAAC
GCCAGTGCCACGGCTCGTAG

Product: DNA-3-methyladenine glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPRHARGFDVEAAFAHLARRDRALGAWMKRIGAIAPQPGWRKPFDPVDALARAILFQQLSGKAASTIVARVKVAIGAQRL
HADTLGRIDDAALRACGVSGNKALALRDLVRRESAGEIPSLRRLAFMEDNAIVDALVPVRGIGRWTVEMMLMFRLGRPDL
LPIDDLGVRKGAQRVDKQEHMPTPKELAVRGERWGPYRTYAAFYLWKIADFSVATNVPTPRSQE

Sequences:

>Translated_224_residues
MPRHARGFDVEAAFAHLARRDRALGAWMKRIGAIAPQPGWRKPFDPVDALARAILFQQLSGKAASTIVARVKVAIGAQRL
HADTLGRIDDAALRACGVSGNKALALRDLVRRESAGEIPSLRRLAFMEDNAIVDALVPVRGIGRWTVEMMLMFRLGRPDL
LPIDDLGVRKGAQRVDKQEHMPTPKELAVRGERWGPYRTYAAFYLWKIADFSVATNVPTPRSQE
>Mature_223_residues
PRHARGFDVEAAFAHLARRDRALGAWMKRIGAIAPQPGWRKPFDPVDALARAILFQQLSGKAASTIVARVKVAIGAQRLH
ADTLGRIDDAALRACGVSGNKALALRDLVRRESAGEIPSLRRLAFMEDNAIVDALVPVRGIGRWTVEMMLMFRLGRPDLL
PIDDLGVRKGAQRVDKQEHMPTPKELAVRGERWGPYRTYAAFYLWKIADFSVATNVPTPRSQE

Specific function: Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine, 3-methylguanine, 7-methylguanine, O2- methylthymine, and O2-methylcytosine from the damaged DNA polymer formed by alkylation lesions [H]

COG id: COG0122

COG function: function code L; 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alkylbase DNA glycosidase alkA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR003265
- InterPro:   IPR003583
- InterPro:   IPR023170 [H]

Pfam domain/function: PF00730 HhH-GPD [H]

EC number: =3.2.2.21 [H]

Molecular weight: Translated: 24884; Mature: 24753

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRHARGFDVEAAFAHLARRDRALGAWMKRIGAIAPQPGWRKPFDPVDALARAILFQQLS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GKAASTIVARVKVAIGAQRLHADTLGRIDDAALRACGVSGNKALALRDLVRRESAGEIPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
LRRLAFMEDNAIVDALVPVRGIGRWTVEMMLMFRLGRPDLLPIDDLGVRKGAQRVDKQEH
HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
MPTPKELAVRGERWGPYRTYAAFYLWKIADFSVATNVPTPRSQE
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCC
>Mature Secondary Structure 
PRHARGFDVEAAFAHLARRDRALGAWMKRIGAIAPQPGWRKPFDPVDALARAILFQQLS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GKAASTIVARVKVAIGAQRLHADTLGRIDDAALRACGVSGNKALALRDLVRRESAGEIPS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCH
LRRLAFMEDNAIVDALVPVRGIGRWTVEMMLMFRLGRPDLLPIDDLGVRKGAQRVDKQEH
HHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
MPTPKELAVRGERWGPYRTYAAFYLWKIADFSVATNVPTPRSQE
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]