| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is imuB [H]
Identifier: 84624897
GI number: 84624897
Start: 3682866
End: 3684284
Strand: Reverse
Name: imuB [H]
Synonym: XOO_3240
Alternate gene names: 84624897
Gene position: 3684284-3682866 (Counterclockwise)
Preceding gene: 84624898
Following gene: 84624896
Centisome position: 74.58
GC content: 68.71
Gene sequence:
>1419_bases ATGTTGTGGGCCTGCGTATTGCTGCCGCAGCTGGCGCTGGACGCTGTCCTTCGGCGTCTGGAAGAGCCGCAGGCGCCGCT GGTGCTGTTGGAGGGTCCGGCGCAGTTACGCAGCCTGCATTCGGTCAATGCCGCGGCTGGCGCGGCCGGGTTAAAGGCCG GCATGCGGCTGTCGGCGGCGCATGCGTTGATGACGCAGGTGCGCACCATCGATTACGACGCGCAGCACGAAGCGCGCACG CAGCGGTTTCTTGCGGCCTGGGCGTATCGGCATAGTTCGCTGGTCAGCCAGCAGTGGTCGCGCGCCATCGTGCTGGAAGC CGGTGCCAGCTTTCGCTTGTTCGGCCCTTGGCCACGCTTCGAGCGCCGCCTGCGCGATGAGCTGCAGGCCTTGGGTTTCC AGCACCGGCTTGCGCTGGCACCCACGCCGCGTGCTGCGCGCGTGCTGGCTGGCCTGCGCGATGGCATGGTGGTCACACAG TTGCCGGCGCTGCACAGCACGCTCGACAACGTGCCGGTGCGTCGCGCCGCATTGCCCGACGATGCCGGCGCGCGCCTGCA ACACATGGGTGTGCGCACGCTGGCAGCGGTGCGCGCCCTGCCGCGTGACGGGTTGCGCCGGCGCTTCGGTGCGGGCCTGC TCGATCATCTGGATCGCCTCTACGGGCAGGTCGACGACCCACTGGAGTGCTACGCGCCGCCAGACCATTTCGACCACCGC GTGGAGCTGGGCTATGAGGTGGAAACGCATCCGGCGCTGCTGTTTCCGTTGCGCCGGCTGATGGGTGACTTATGTACGTA TCTGTCCATTCGCGATGGTGGCGTACAGCGGTTTTTACTGCGCCTGGAACACGAAGAAGGCGCAACCGATGTGGAGATCG GCCTGCTGACGCCGGAACGTGCGCCCACGTTGCTATTGGAGCTGGCGCGCAATCGGCTGGAGCGGGTGGAGATCCCACGG CCGGTGGTGGCGATGCGCCTGCTGGCACGGCAACTGCCACCGTTCGTACCGGCCATGCGCGACCTGTTCGATCAACGCGC ACAACAAACGGTGGAGTGGCCGCAACTGCGCGAGCGCCTGCGTGCGCGGCTTGGCGATGACGCGGTGTATCGCGTCCTGC CGGCCGACGACCCGCGCCCGGAACGCGCCTGGCGTCGCGCCATCGGCGATGCGGTGCGCGAAGCCGCCGCGCCGCCACGT CCGCCGCGCCCCACTTGGCTGTTGCCGCAGCCGGTGCCCCTGCACGACCCACACCTGCGCATCGTGTCCGGCCCGGAACG GCTGGAAAGCGGCTGGTGGGACGATGACGAGGCGCGTCGCGACTACTACGTGGTGGAGACCGCGCGCGGCCGCCGCGGCT GGGCCTTTGCCGCGCCTGGCCGATTGGATGGCTGGATGCTGCATGGGTGGTTTGCGTGA
Upstream 100 bases:
>100_bases GCTGGAATTCCTGCCCGAGCGCGATGCCTGGCAAGTGCGCAAATGCCGCGGCGGGCAGGTGCCGTCGCAGCCGTTGCGGC TGGCGCATTGAGGCGCGCGC
Downstream 100 bases:
>100_bases TCGCTCGCATGCCTGGACGGTCTCCACGCATGGGCTACATGGCGGCTCGTCGCAGCTTGGGCGCGCGCTGCAGATATCGG GTCTGCAGGCCAAACGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MLWACVLLPQLALDAVLRRLEEPQAPLVLLEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQHEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDNVPVRRAALPDDAGARLQHMGVRTLAAVRALPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLMGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLLELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQTVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREAAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRLDGWMLHGWFA
Sequences:
>Translated_472_residues MLWACVLLPQLALDAVLRRLEEPQAPLVLLEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQHEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDNVPVRRAALPDDAGARLQHMGVRTLAAVRALPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLMGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLLELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQTVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREAAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRLDGWMLHGWFA >Mature_472_residues MLWACVLLPQLALDAVLRRLEEPQAPLVLLEGPAQLRSLHSVNAAAGAAGLKAGMRLSAAHALMTQVRTIDYDAQHEART QRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRFERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQ LPALHSTLDNVPVRRAALPDDAGARLQHMGVRTLAAVRALPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR VELGYEVETHPALLFPLRRLMGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPERAPTLLLELARNRLERVEIPR PVVAMRLLARQLPPFVPAMRDLFDQRAQQTVEWPQLRERLRARLGDDAVYRVLPADDPRPERAWRRAIGDAVREAAAPPR PPRPTWLLPQPVPLHDPHLRIVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRLDGWMLHGWFA
Specific function: Along with dnaE2 and imuA is required for the error- prone processing of DNA lesions [H]
COG id: COG0389
COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001126 [H]
Pfam domain/function: PF00817 IMS [H]
EC number: NA
Molecular weight: Translated: 53405; Mature: 53405
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWACVLLPQLALDAVLRRLEEPQAPLVLLEGPAQLRSLHSVNAAAGAAGLKAGMRLSAA CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH HALMTQVRTIDYDAQHEARTQRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRF HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHH ERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQLPALHSTLDNVPVRRAALPD HHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCC DAGARLQHMGVRTLAAVRALPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR CCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCC VELGYEVETHPALLFPLRRLMGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPER EEECEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC APTLLLELARNRLERVEIPRPVVAMRLLARQLPPFVPAMRDLFDQRAQQTVEWPQLRERL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH RARLGDDAVYRVLPADDPRPERAWRRAIGDAVREAAAPPRPPRPTWLLPQPVPLHDPHLR HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE IVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRLDGWMLHGWFA EECCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCEEEECCCC >Mature Secondary Structure MLWACVLLPQLALDAVLRRLEEPQAPLVLLEGPAQLRSLHSVNAAAGAAGLKAGMRLSAA CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH HALMTQVRTIDYDAQHEARTQRFLAAWAYRHSSLVSQQWSRAIVLEAGASFRLFGPWPRF HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCHHH ERRLRDELQALGFQHRLALAPTPRAARVLAGLRDGMVVTQLPALHSTLDNVPVRRAALPD HHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHCCCC DAGARLQHMGVRTLAAVRALPRDGLRRRFGAGLLDHLDRLYGQVDDPLECYAPPDHFDHR CCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHCCCCCCCCCC VELGYEVETHPALLFPLRRLMGDLCTYLSIRDGGVQRFLLRLEHEEGATDVEIGLLTPER EEECEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCCC APTLLLELARNRLERVEIPRPVVAMRLLARQLPPFVPAMRDLFDQRAQQTVEWPQLRERL HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHH RARLGDDAVYRVLPADDPRPERAWRRAIGDAVREAAAPPRPPRPTWLLPQPVPLHDPHLR HHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEE IVSGPERLESGWWDDDEARRDYYVVETARGRRGWAFAAPGRLDGWMLHGWFA EECCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA