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The map label for this gene is yncD [C]

Identifier: 84624860

GI number: 84624860

Start: 3630978

End: 3633038

Strand: Reverse

Name: yncD [C]

Synonym: XOO_3203

Alternate gene names: 84624860

Gene position: 3633038-3630978 (Counterclockwise)

Preceding gene: 84624861

Following gene: 84624859

Centisome position: 73.54

GC content: 65.16

Gene sequence:

>2061_bases
ATGCGGCCGTGCTGCCACGGCAAAAGGTTGGTCATGCGTCTAAGGTTGTTGAAAACGATGTGGTATGCGCCGTCGTTGGC
GCTGGTGTGGGGGCCGGCATGCCATGTGCAGGCACAGGATGCGGCACTGACGCTGGGCAAGGTGCAGGTGCGCGAACACG
CGCAGCGCAGTCCGAGTACGGCGCGCGTGTTGAGCTCGGTGGATGTGATCGGCGGCGAGCTGCTGCACGATCAACACGTG
GACTACAGCTGGGAACTGCTGATGCGTGCGCCCGGGGTGCAGGTCACCCAGTTCCGCATGGGCACGGATGCAGGCCGGTT
TTCGTTCCGCGGCTTCAATGGCGAGGGGCGCATCAATGCGGTGAAACTGCTGATCGACGGCATTCCCAGCAACGACAATG
CCGGCGCCATGCCGTACCTGGATGCCGTGTTTCCGCAGGACATCAGCGCGATCGAGATCGTGCGCGGCACCAACGACGCG
CGCTATGGCTTGAACGCCATTGCCGGCAGCGTGGACGTGCTGACCCGTACCGGCGGCAACGATGGCCGCTTGAGCGTGAC
GGCCGGCAGCTTCGATGCGCGCGAGGTGCAACTCAGCAAAGGTTTCGAGCAGGGCGCATGGAGCCAGAACTATATGCTGG
CCTGGCGCGACTCGGACGGCTATCGCGATCATGCCGATGCGCGTAAACGCAGCGTAGCGGGCAAATGGTTTTACACCGAC
CCGGACGGTGCATTCCGCGCCGGACTCACCACGCGCTATTACGACAACCATGCACTGGAAGCCGGCTATCTGGACGCCGC
CACCGCGCGTGCGGCGCCGCGTAGCTCGCCGGACTATGCGCAGAACGACCGCAGCCAGCGCCGCCTGCGTCAGACCGCGT
TGCATGCGGACGGCGAGCTCGGTGAGCAGGCGCAATGGAGCGCCAAGGCCTACCAGAACGACTACCGCAATCAGCGCTGG
GTGCGGTTTTCTGCTGCCGGCCTGCAGCAGGAACGCGATACCGATGAGACCCATCGCGGGCTGTTGCTGCGTAGCAACTG
GCAGCCGGACTGGGGCGCGCTCAATGCCAATCTCGAAGCCGGCGTGGATGCGCAGTGGCAGGAAAATCAGTCGCAGCGGT
ACCGCACCGTGGCCCGCGTACGCGGTGCGCAGTTGCGCGATTGGGATTACGACCTGCGCACACGTGGTGCGTATGTCCAG
GCGGTGCTGACGCCGTTTGCGCGCTTGCAGCTGGTGCCGGGGTATCGCATCGACCGCGTCGATGGGCAGTTGCACGATGT
GCTGGCCGGCAGCGTTGCGCCGACCTATGACTACGGCACCATCAAGCAACCCAAGTTCAGCGCGAGCTACCGCGTGGGCG
GGCAGAGCAGCGTGTATGCGAACTGGGGGCGCACGTTCCAGATCGGCAGCGGCGATGGTGCCTACCGTCGCCAGTCCGGC
GATCTGGGGCCATCGATCAACGACGGTTGGGAGACCGGCTTCAAGTTCGCACCGTCGACCCTGGTGGATGGGCGCCTGGC
GTATTGGGAGCAACGCGCATCCGGTGAAGTGGCGACCGTTCTTGGCGTGAATGGCGTGGTGGGCATTGGCGCTGTGGCCA
ATGTCGGCCGCACGTTGCGGCGCGGTTGGGATGCGCAGCTCAACCTGCAGCCGGCTGAGCACTGGCGCGCATGGGTATCG
TATTCGCGGCAGAAGGCCATGATCGCCACCCCCGATCCGAGCGCACCGGCCACGCGCGGCAAGGAGATCGAAAACGTGCC
GCACTGGCTGGCGACCGCCGGGCTGGAGTGGCAGCTCAGTTCGGCGGTGCAGTTGAGCGCCTGGGGCAACGCGCAAGGTG
ATTACTATCTGGAGCGCACCAATACGCTGGGCCGTGCCGGTGGCGATGCCTTGCTCAATCTGGGCGCGCGCTGGAATGTG
GATGCGCGCAACGCGCTCAGCCTGCAGCTGCGCAATGTCACCGATCGTGCGTATGTGTACGCCTGGTACGACAGCGGCAC
CTCCGGCTATTCGCCCGGCGATGGGCGTGCGTTGTCGCTGTCGTGGGATTGGAGCTTCTGA

Upstream 100 bases:

>100_bases
TACGCGCCTGAGCTGTCGGCGTCGCTGCCGGGCCTCGCGGACGACCCGCTCCCTATGCGAGTGATGCCAATGCGCGCCAC
GGTGTTGGCAGCGCACGGCT

Downstream 100 bases:

>100_bases
TGCATGCAATGACGGACGGCAGTGGCGTCGCCGAGGCACGCCAAGGTAGCCGCTGGCGCTTCTATCGCGCGGTATGGCGC
TGGCATTTCTATGCCGGACT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor Plug; NB-Dependent Outer Membrane Receptor; NB-Receptor Protein; Outer Membrane Receptor Protein; NB-Dependent Receptor YncD; NB-Dependent Receptor Plug Domain-Containing; Nb-Dependent Receptor; NB-Dependent Receptor For Iron Transport; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MRPCCHGKRLVMRLRLLKTMWYAPSLALVWGPACHVQAQDAALTLGKVQVREHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYMLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSQRRLRQTALHADGELGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALNANLEAGVDAQWQENQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPFARLQLVPGYRIDRVDGQLHDVLAGSVAPTYDYGTIKQPKFSASYRVGGQSSVYANWGRTFQIGSGDGAYRRQSG
DLGPSINDGWETGFKFAPSTLVDGRLAYWEQRASGEVATVLGVNGVVGIGAVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKAMIATPDPSAPATRGKEIENVPHWLATAGLEWQLSSAVQLSAWGNAQGDYYLERTNTLGRAGGDALLNLGARWNV
DARNALSLQLRNVTDRAYVYAWYDSGTSGYSPGDGRALSLSWDWSF

Sequences:

>Translated_686_residues
MRPCCHGKRLVMRLRLLKTMWYAPSLALVWGPACHVQAQDAALTLGKVQVREHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYMLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSQRRLRQTALHADGELGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALNANLEAGVDAQWQENQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPFARLQLVPGYRIDRVDGQLHDVLAGSVAPTYDYGTIKQPKFSASYRVGGQSSVYANWGRTFQIGSGDGAYRRQSG
DLGPSINDGWETGFKFAPSTLVDGRLAYWEQRASGEVATVLGVNGVVGIGAVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKAMIATPDPSAPATRGKEIENVPHWLATAGLEWQLSSAVQLSAWGNAQGDYYLERTNTLGRAGGDALLNLGARWNV
DARNALSLQLRNVTDRAYVYAWYDSGTSGYSPGDGRALSLSWDWSF
>Mature_686_residues
MRPCCHGKRLVMRLRLLKTMWYAPSLALVWGPACHVQAQDAALTLGKVQVREHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYMLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSQRRLRQTALHADGELGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALNANLEAGVDAQWQENQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPFARLQLVPGYRIDRVDGQLHDVLAGSVAPTYDYGTIKQPKFSASYRVGGQSSVYANWGRTFQIGSGDGAYRRQSG
DLGPSINDGWETGFKFAPSTLVDGRLAYWEQRASGEVATVLGVNGVVGIGAVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKAMIATPDPSAPATRGKEIENVPHWLATAGLEWQLSSAVQLSAWGNAQGDYYLERTNTLGRAGGDALLNLGARWNV
DARNALSLQLRNVTDRAYVYAWYDSGTSGYSPGDGRALSLSWDWSF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76018; Mature: 76018

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS01140 GLYCOSYL_HYDROL_F45

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPCCHGKRLVMRLRLLKTMWYAPSLALVWGPACHVQAQDAALTLGKVQVREHAQRSPST
CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCEEEEHHHHHHHHHHCCCCH
ARVLSSVDVIGGELLHDQHVDYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINA
HHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEE
VKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDARYGLNAIAGSVDVLTRTGGN
EEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCC
DGRLSVTAGSFDAREVQLSKGFEQGAWSQNYMLAWRDSDGYRDHADARKRSVAGKWFYTD
CCEEEEEECCCCCCEEHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEC
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSQRRLRQTALHADGEL
CCCCEECCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHCHHHHHHHHHHHHCCCCCC
GEQAQWSAKAYQNDYRNQRWVRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALNANLEA
CCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCHHHCCEEEECCCCCCCCEECCCCCC
GVDAQWQENQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQAVLTPFARLQLVPGYRIDRV
CCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHEEECCCCEEECC
DGQLHDVLAGSVAPTYDYGTIKQPKFSASYRVGGQSSVYANWGRTFQIGSGDGAYRRQSG
CCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCEEEECCCCCCCCCCCC
DLGPSINDGWETGFKFAPSTLVDGRLAYWEQRASGEVATVLGVNGVVGIGAVANVGRTLR
CCCCCCCCCHHCCCEECCCHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RGWDAQLNLQPAEHWRAWVSYSRQKAMIATPDPSAPATRGKEIENVPHWLATAGLEWQLS
CCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHCCCHHHHHCCCCEEEC
SAVQLSAWGNAQGDYYLERTNTLGRAGGDALLNLGARWNVDARNALSLQLRNVTDRAYVY
CEEEEEECCCCCCCEEEEECCCCCCCCCHHHEECCCEECCCCCCEEEEEEECCCCCEEEE
AWYDSGTSGYSPGDGRALSLSWDWSF
EEEECCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MRPCCHGKRLVMRLRLLKTMWYAPSLALVWGPACHVQAQDAALTLGKVQVREHAQRSPST
CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCEEEEHHHHHHHHHHCCCCH
ARVLSSVDVIGGELLHDQHVDYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINA
HHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEE
VKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDARYGLNAIAGSVDVLTRTGGN
EEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCC
DGRLSVTAGSFDAREVQLSKGFEQGAWSQNYMLAWRDSDGYRDHADARKRSVAGKWFYTD
CCEEEEEECCCCCCEEHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEC
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSQRRLRQTALHADGEL
CCCCEECCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCHHHCHHHHHHHHHHHHCCCCCC
GEQAQWSAKAYQNDYRNQRWVRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALNANLEA
CCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCHHHCCEEEECCCCCCCCEECCCCCC
GVDAQWQENQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQAVLTPFARLQLVPGYRIDRV
CCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHEEECCCCEEECC
DGQLHDVLAGSVAPTYDYGTIKQPKFSASYRVGGQSSVYANWGRTFQIGSGDGAYRRQSG
CCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCEEEECCCCCCCCCCCC
DLGPSINDGWETGFKFAPSTLVDGRLAYWEQRASGEVATVLGVNGVVGIGAVANVGRTLR
CCCCCCCCCHHCCCEECCCHHCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
RGWDAQLNLQPAEHWRAWVSYSRQKAMIATPDPSAPATRGKEIENVPHWLATAGLEWQLS
CCCCCEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHCCCHHHHHCCCCEEEC
SAVQLSAWGNAQGDYYLERTNTLGRAGGDALLNLGARWNVDARNALSLQLRNVTDRAYVY
CEEEEEECCCCCCCEEEEECCCCCCCCCHHHEECCCEECCCCCCEEEEEEECCCCCEEEE
AWYDSGTSGYSPGDGRALSLSWDWSF
EEEECCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA