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The map label for this gene is ccmF [H]

Identifier: 84624517

GI number: 84624517

Start: 3209766

End: 3211754

Strand: Direct

Name: ccmF [H]

Synonym: XOO_2860

Alternate gene names: 84624517

Gene position: 3209766-3211754 (Clockwise)

Preceding gene: 84624516

Following gene: 84624518

Centisome position: 64.97

GC content: 64.91

Gene sequence:

>1989_bases
ATGACGCCTGAACTCGGCCAGATCGCCTTGATCCTGGCGCTATTGTTATCGCTTGCCCAGAGCGTGTTGCCGTTGATCGG
TGCGTGGCGTGGCAACACCGCGTTGATGGACATCGCGCGGCCTGCGGCGGTGGGCCAGGCGGTGTTCGTGTGGATGGCGT
TCGGCTTGCTTGCCTGGTCGCTGTTGTCGCTGGATTTTTCGGTGGGCTACGTCGCCGCCAACGCCAACATCGCCCTGCCC
TGGTACTACCGCTTCGCCGCGGTGTGGGGCGCGCACGAAGGCTCGTTGCTGTTGTGGATCGCCATCCTGGCCACCTGGAC
GGTGCTGTTGGCCGCCTTCAGCCGACATCTGCCGCAGCACTTCGCCGCCCGCGTGCTGGCGGTGCTGGGACTGATCTCGG
TGGGCTTTCTGGCTTTCATCCTGCTGACCTCCAATCCATTCGCGCGGCTGTCGCCGATTCCGCTGGATGGCAACGAACTC
AATCCGGTGCTGCAGGATCCGGGCATGACCTTCCACCCGCCGGTGCTGTACACCGGCTATGTCGGCTTCTCGGTGGCGTT
CGCATTTGCGGTCGCGGCATTGCTCGGCGGCGAACTGGAACAGGCCTGGGTACGCTGGGCGCGACCGTGGACCAATGTCG
CCTGGGCCTGTCTCACCGCCGGCATCGTCGCCGGTAGCTGGTGGGCCTATGCGGAACTGGGCTGGGGCGGCTGGTGGTTC
TGGGACCCGGTGGAAAACGCCAGTTTCATGCCATGGCTGGTCGGTACCGCATTGATCCACACCCAGGCAGTGACCGAAAA
ACGCGGCAGCCTGCGCGCATGGACCATCCTGCTGTCGATCCTGGCGTTCTCGCTGTCGTTGCTGGGCACCTTCCTGGTGC
GCTCGGGCGTGCTGACCTCGGTGCATGCCTTCGCTGCCGATCCGCGTCGCGGCTTGTACATCCTCATTTTTCTGGTCGCG
GTGGTCGGTGGTTCGTTGCTGTTGTATGCACTGCGCGCCCCCAAAATTGCCAGCGGCAAACCCTTCGCCGCCGCCTCGCG
CGAAACCGGCATTCTCATCGGCAACCTGTTGCTTACCGTGGCCGCGGCCATGGTGCTGTTGGGCACCTTGTTCCCGCTGA
TCGCCGATGCCTTTGGCCTGGGTAAGGTGTCGGTAGGGCCGCCCTACTTCGGCCTGCTGTTTCCGCTGTTGATGTTGCCG
GTGCTGCTGTTGCTGCCGTTCGGTCCGTACCTGCACTGGGGCAAAGCCGAGGCCGCACCGTTGCAGACACTCGGCACGCG
CGCCGGCATCGCCGCGATTGCGTGCGCGCTGGTCGGCAGCGTGTTTGCCGATGGTCAGGCCAAGGCGATCGCCGGCATGG
GCGTCGCCGCATGGGTGGCCGCGGGCACCGCGTTGTACGTGGTCAAACGCTGGCGCGAGATGCCGCACGGGCGACGCTTT
CCCGCTGAAATGGCCGGCATGCTGATCGCGCACGCGGGCGTGGCGGTGTTCGTAGCCGGTGTGCTGGTGTCCGAAAGCCT
GTCGGTAGAACGCGATGTGCGGCTATCGCCCGGCGCGAGCGCGCAGATTGCCGGCTACAACTTCCGCTTCGATGGCGTGC
AGCTGATGGATGGGCCGAACTGGAAGGCCGAACAAGGCAGCGTGCAGGTCAGCCGCGACGGCCAGGTGGTCGCGCAATTG
CATCCGCAAAAACGTCTGTACAGCAGCGAGCGGATCCAGACCGAATCGGCGATCGATCCCGGCATCACCCGCGACCTGTA
TGTCGCGCTCGGCGAGCCCTTGGACGACCAGCACATCGAAAACGACTGGACGCTGCGGCTGTACTACAAACCCTTCATTC
GCTGGATCTGGGCCGGCGGCCTGCTGATGATGCTGGGTGGTCTCGTCAGTGCCTGCGCACGTCGCTTTCGTGCACCGGCG
ACTGTCACTACATCGGCCACATCTGCGGCGCATCCGGCTGTCGTCATCGCACAGGAATCGCTCCGGTGA

Upstream 100 bases:

>100_bases
TCCCCGCCACCGCCGCACCGCTGACCACGCCGCGTTGATGCGCTTGTGGTTGGTGCCACGTCCATCGATGACTCCGTTCC
GTTTCACTTGCGATTCGCCC

Downstream 100 bases:

>100_bases
ATCGTCTGCTGCCCTTGCTGGGCTTCCTGTTGCTGGCGGCGCTGTTCGGCTTCGGCATCCTGTGGACGATGCAGCACAAT
CCGCGCGATGTGCCCTCGCC

Product: C-type cytochrome biogenesis membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 661

Protein sequence:

>662_residues
MTPELGQIALILALLLSLAQSVLPLIGAWRGNTALMDIARPAAVGQAVFVWMAFGLLAWSLLSLDFSVGYVAANANIALP
WYYRFAAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQHFAARVLAVLGLISVGFLAFILLTSNPFARLSPIPLDGNEL
NPVLQDPGMTFHPPVLYTGYVGFSVAFAFAVAALLGGELEQAWVRWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWF
WDPVENASFMPWLVGTALIHTQAVTEKRGSLRAWTILLSILAFSLSLLGTFLVRSGVLTSVHAFAADPRRGLYILIFLVA
VVGGSLLLYALRAPKIASGKPFAAASRETGILIGNLLLTVAAAMVLLGTLFPLIADAFGLGKVSVGPPYFGLLFPLLMLP
VLLLLPFGPYLHWGKAEAAPLQTLGTRAGIAAIACALVGSVFADGQAKAIAGMGVAAWVAAGTALYVVKRWREMPHGRRF
PAEMAGMLIAHAGVAVFVAGVLVSESLSVERDVRLSPGASAQIAGYNFRFDGVQLMDGPNWKAEQGSVQVSRDGQVVAQL
HPQKRLYSSERIQTESAIDPGITRDLYVALGEPLDDQHIENDWTLRLYYKPFIRWIWAGGLLMMLGGLVSACARRFRAPA
TVTTSATSAAHPAVVIAQESLR

Sequences:

>Translated_662_residues
MTPELGQIALILALLLSLAQSVLPLIGAWRGNTALMDIARPAAVGQAVFVWMAFGLLAWSLLSLDFSVGYVAANANIALP
WYYRFAAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQHFAARVLAVLGLISVGFLAFILLTSNPFARLSPIPLDGNEL
NPVLQDPGMTFHPPVLYTGYVGFSVAFAFAVAALLGGELEQAWVRWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWF
WDPVENASFMPWLVGTALIHTQAVTEKRGSLRAWTILLSILAFSLSLLGTFLVRSGVLTSVHAFAADPRRGLYILIFLVA
VVGGSLLLYALRAPKIASGKPFAAASRETGILIGNLLLTVAAAMVLLGTLFPLIADAFGLGKVSVGPPYFGLLFPLLMLP
VLLLLPFGPYLHWGKAEAAPLQTLGTRAGIAAIACALVGSVFADGQAKAIAGMGVAAWVAAGTALYVVKRWREMPHGRRF
PAEMAGMLIAHAGVAVFVAGVLVSESLSVERDVRLSPGASAQIAGYNFRFDGVQLMDGPNWKAEQGSVQVSRDGQVVAQL
HPQKRLYSSERIQTESAIDPGITRDLYVALGEPLDDQHIENDWTLRLYYKPFIRWIWAGGLLMMLGGLVSACARRFRAPA
TVTTSATSAAHPAVVIAQESLR
>Mature_661_residues
TPELGQIALILALLLSLAQSVLPLIGAWRGNTALMDIARPAAVGQAVFVWMAFGLLAWSLLSLDFSVGYVAANANIALPW
YYRFAAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQHFAARVLAVLGLISVGFLAFILLTSNPFARLSPIPLDGNELN
PVLQDPGMTFHPPVLYTGYVGFSVAFAFAVAALLGGELEQAWVRWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWFW
DPVENASFMPWLVGTALIHTQAVTEKRGSLRAWTILLSILAFSLSLLGTFLVRSGVLTSVHAFAADPRRGLYILIFLVAV
VGGSLLLYALRAPKIASGKPFAAASRETGILIGNLLLTVAAAMVLLGTLFPLIADAFGLGKVSVGPPYFGLLFPLLMLPV
LLLLPFGPYLHWGKAEAAPLQTLGTRAGIAAIACALVGSVFADGQAKAIAGMGVAAWVAAGTALYVVKRWREMPHGRRFP
AEMAGMLIAHAGVAVFVAGVLVSESLSVERDVRLSPGASAQIAGYNFRFDGVQLMDGPNWKAEQGSVQVSRDGQVVAQLH
PQKRLYSSERIQTESAIDPGITRDLYVALGEPLDDQHIENDWTLRLYYKPFIRWIWAGGLLMMLGGLVSACARRFRAPAT
VTTSATSAAHPAVVIAQESLR

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=660, Percent_Identity=50, Blast_Score=596, Evalue=1e-171,
Organism=Escherichia coli, GI1790511, Length=356, Percent_Identity=48.0337078651685, Blast_Score=274, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71124; Mature: 70993

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPELGQIALILALLLSLAQSVLPLIGAWRGNTALMDIARPAAVGQAVFVWMAFGLLAWS
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHH
LLSLDFSVGYVAANANIALPWYYRFAAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQH
HHHHHHCCEEEEECCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FAARVLAVLGLISVGFLAFILLTSNPFARLSPIPLDGNELNPVLQDPGMTFHPPVLYTGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCHHEEHH
VGFSVAFAFAVAALLGGELEQAWVRWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWF
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLVGTALIHTQAVTEKRGSLRAWTILLSILAFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPRRGLYILIFLVAVVGGSLLLYALRAPKIASGKPFAAASRETGILIGNLLLTV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AAAMVLLGTLFPLIADAFGLGKVSVGPPYFGLLFPLLMLPVLLLLPFGPYLHWGKAEAAP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
LQTLGTRAGIAAIACALVGSVFADGQAKAIAGMGVAAWVAAGTALYVVKRWREMPHGRRF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAEMAGMLIAHAGVAVFVAGVLVSESLSVERDVRLSPGASAQIAGYNFRFDGVQLMDGPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEECEEEEECCEEEECCCC
WKAEQGSVQVSRDGQVVAQLHPQKRLYSSERIQTESAIDPGITRDLYVALGEPLDDQHIE
CCCCCCCEEEECCCCEEEEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHCCCCCCCCCCC
NDWTLRLYYKPFIRWIWAGGLLMMLGGLVSACARRFRAPATVTTSATSAAHPAVVIAQES
CCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCC
LR
CC
>Mature Secondary Structure 
TPELGQIALILALLLSLAQSVLPLIGAWRGNTALMDIARPAAVGQAVFVWMAFGLLAWS
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHH
LLSLDFSVGYVAANANIALPWYYRFAAVWGAHEGSLLLWIAILATWTVLLAAFSRHLPQH
HHHHHHCCEEEEECCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FAARVLAVLGLISVGFLAFILLTSNPFARLSPIPLDGNELNPVLQDPGMTFHPPVLYTGY
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCHHCCCCCCCCCCHHEEHH
VGFSVAFAFAVAALLGGELEQAWVRWARPWTNVAWACLTAGIVAGSWWAYAELGWGGWWF
HHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEE
WDPVENASFMPWLVGTALIHTQAVTEKRGSLRAWTILLSILAFSLSLLGTFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPRRGLYILIFLVAVVGGSLLLYALRAPKIASGKPFAAASRETGILIGNLLLTV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
AAAMVLLGTLFPLIADAFGLGKVSVGPPYFGLLFPLLMLPVLLLLPFGPYLHWGKAEAAP
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
LQTLGTRAGIAAIACALVGSVFADGQAKAIAGMGVAAWVAAGTALYVVKRWREMPHGRRF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAEMAGMLIAHAGVAVFVAGVLVSESLSVERDVRLSPGASAQIAGYNFRFDGVQLMDGPN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEECEEEEECCEEEECCCC
WKAEQGSVQVSRDGQVVAQLHPQKRLYSSERIQTESAIDPGITRDLYVALGEPLDDQHIE
CCCCCCCEEEECCCCEEEEECCHHHHHHHHHHCHHHCCCCCCCHHHHHHCCCCCCCCCCC
NDWTLRLYYKPFIRWIWAGGLLMMLGGLVSACARRFRAPATVTTSATSAAHPAVVIAQES
CCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEECCC
LR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]