| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is fadJ [H]
Identifier: 84624380
GI number: 84624380
Start: 3072226
End: 3073095
Strand: Direct
Name: fadJ [H]
Synonym: XOO_2723
Alternate gene names: 84624380
Gene position: 3072226-3073095 (Clockwise)
Preceding gene: 84624379
Following gene: 84624386
Centisome position: 62.19
GC content: 61.15
Gene sequence:
>870_bases ATGTCTGCAGTTCAACCCTTCATTCGCACCAATATTGACTCAACCCTACGCATCATTGAAGAACCGCAGCGTGAGGTGTA CTGGATCCATATGCATGCCGATCTTTCAGTCAACCCGGGGCGCGCCTGCTTCTCGACGCGCCTAGTCGACGACATCACCC GCTATCAGACCAACCTGGGGCAGCGCCTGACCGACGCAGGCGTGCTGGCACCGCACGTGGTGTTGGCGTCCGACAGTGAC GTGTTCAACCTGGGCGGCGACCTGGCCTTGTTTTGCCGACTCATTCGCGAAGGCGACCGAGTTCGACTGCTTGATTACGC CCAACGCTGTGTGCGCGGTGTACATGCCTTCCATGTCGGACTCGGCGCACGTGCGCACAGCATTGCCCTGGTGCAGGGCA ATGCGCTTGGCGGCGGATTTGAAGCCGCATTGAGCTGCCACACCATCATCGCCGAGGAAGGCGTGATGATGGGCTTGCCC GAAGTGCTGTTCGACCTGTTTCCGGGGATGGGCGCCTACTCTTTCATGTGCCAGCGCGTCAGTGCGCAACTGGCGCAAAA GATCATGCTTGAAGGCAATCTGTACTCCGCCGAGCAGTTGCTTGGCATGGGTCTGGTTGATCGCGTGGTGCCGCGCGGCC AGGGCGTGGCCGCAGTCGAACAGGTGATCCGCGAAAGCAAGCGCACGCCGCATGCCTGGGCGGCGATGCAGCAGGTGCGC GAAATGACCACCGCAGTACCATTGGACGAGATGATGCGCATCACCGAAATCTGGGTCGATACGGCGATGCAGTTAGGCGA GAAGTCGTTGCGCACCATGGATCGCCTGGTCCGCGCGCAATCGCGTCGCTCCGGGCTTGACGCCGGCTGA
Upstream 100 bases:
>100_bases CTTTTACACGCATAGAATTCGACGTCGGCGCACGCTCACGCGTTCAATCTTATGTCCGTCCGAAAGGCGGCCGGCCGGAC GGTCATCACGGAGAACCAAC
Downstream 100 bases:
>100_bases TGTGCGGCGGGCTATTCGCTGCTCCGGGGGGAGCGTTCGTCGTCTTTGACGCCTTGCAGGCGTGCGTCGAGTACCTCCCT TCCGGTCTGTAGCTGCTCGC
Product: enoyl-CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MSAVQPFIRTNIDSTLRIIEEPQREVYWIHMHADLSVNPGRACFSTRLVDDITRYQTNLGQRLTDAGVLAPHVVLASDSD VFNLGGDLALFCRLIREGDRVRLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLP EVLFDLFPGMGAYSFMCQRVSAQLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVR EMTTAVPLDEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLDAG
Sequences:
>Translated_289_residues MSAVQPFIRTNIDSTLRIIEEPQREVYWIHMHADLSVNPGRACFSTRLVDDITRYQTNLGQRLTDAGVLAPHVVLASDSD VFNLGGDLALFCRLIREGDRVRLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLP EVLFDLFPGMGAYSFMCQRVSAQLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVR EMTTAVPLDEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLDAG >Mature_288_residues SAVQPFIRTNIDSTLRIIEEPQREVYWIHMHADLSVNPGRACFSTRLVDDITRYQTNLGQRLTDAGVLAPHVVLASDSDV FNLGGDLALFCRLIREGDRVRLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPE VLFDLFPGMGAYSFMCQRVSAQLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVRE MTTAVPLDEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLDAG
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1024
COG function: function code I; Enoyl-CoA hydratase/carnithine racemase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the central section; belongs to the 3-hydroxyacyl- CoA dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788682, Length=180, Percent_Identity=28.8888888888889, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787659, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790281, Length=170, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558304, Length=186, Percent_Identity=27.4193548387097, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012802 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =1.1.1.35 [H]
Molecular weight: Translated: 31906; Mature: 31775
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVQPFIRTNIDSTLRIIEEPQREVYWIHMHADLSVNPGRACFSTRLVDDITRYQTNLG CCCCCHHHHHCHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH QRLTDAGVLAPHVVLASDSDVFNLGGDLALFCRLIREGDRVRLLDYAQRCVRGVHAFHVG HHHHHCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRV CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHH SAQLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH EMTTAVPLDEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLDAG HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SAVQPFIRTNIDSTLRIIEEPQREVYWIHMHADLSVNPGRACFSTRLVDDITRYQTNLG CCCCHHHHHCHHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH QRLTDAGVLAPHVVLASDSDVFNLGGDLALFCRLIREGDRVRLLDYAQRCVRGVHAFHVG HHHHHCCHHHCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRV CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHH SAQLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVR HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH EMTTAVPLDEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRRSGLDAG HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA