| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84624327
Identifier: 84624327
GI number: 84624327
Start: 3003668
End: 3004627
Strand: Direct
Name: 84624327
Synonym: XOO_2670
Alternate gene names: NA
Gene position: 3003668-3004627 (Clockwise)
Preceding gene: 84624323
Following gene: 84624328
Centisome position: 60.8
GC content: 62.92
Gene sequence:
>960_bases ATGAACATGGCCGCAGTCAGTCACGAAGCGCGTTTTTCCGCCTATCTGGATGAGCTATCCGCTGGGCTTGGTTATGCCGA TCGGGCGGCGGGCTTACACGGTTATTGCCGTGGATTGATGCTGCCGTTGGAGCGCAAAAGCGTGGAGCCGCTGGCGGCGC ATCTGGATCCGCTGCGGACACGGGCTCAGCATCAAGCGTTGCACCATTTCGTGGCCAAGTCGGATTGGTCTGATGCGGCG GTGCTGGAGCGCGTCCGTCAGTACGTCTCATCACGAATGGAGTTGAAGGGCGAGGTGTACTGGATCGTGGACCACACGGG TTTTCGCAAGAAGGGCAAGCATTCGGTCGGCGTGGCCCGACAATACTGCGGGGAGATCGGCAAGCAGGACAACTGCCAGG TGGCAGTGAGCGTATCGCTGGCGACGCCGGCGGCGAGCGTGCCGATGGCCTTTGGGCTGTATCTTCCTGAGGCTTGGGCG GCCGATGCGGCGCAGCGGGAGAAGGCCGGTGTTCCGAAGGAGATCACGTTCGCCACCAAGCCGGAAATAGCGCTGGCGCA GATACATGCTGCGCATGCCGCAGGTGTTGTGCGCGGCACGGTGTTGGCCGATGCGGCCTATGGCAGCAATACGGCCTGGC GTGATGCGCTGGCGGCCTTGGAACTGACCTATGCGGTGGGGATTGTGTCCAGCGTCAAGGTCTGGCCGCCTGGGCAAACG CCCGAGGCGCCCGCGCCGTGGAAGGGTCAGGGCCGTCCTGCGATCCGCCATCGCCGCACGGCTGATCGTCAACCACAGTC GGTGGAGGCCCTGGCGCGATCCTTGCCTCGGCGCGCCTGTAATGACCCACTGATTTTCTGCTCAAGTGCTACTTTCCCCG AAGGAGACACCGATGAGCGAAATGATGGAAGAAGAGATCAAGCGCTGGACCGCCCGTCGCAAGTCGGCGCTGGTCCTTGA
Upstream 100 bases:
>100_bases TCAGCATTATACGGGCTGCGCGCATAAAATTTTTGCGTAATTGCTTAGTACTACTATGTCATAAAAAGGTTATTCTGCAG TCAGTCCACAACGCACTGAG
Downstream 100 bases:
>100_bases GATCATCCAGGGCAAGACGACGGTGGCAGCGGCCAGCCGCCAGTTCGACCTGACACCGGCTGAGATCGAAAGCTGGGTTG AGGATGGCAAGCGCGGTATG
Product: ISXo8 transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 319
Protein sequence:
>319_residues MNMAAVSHEARFSAYLDELSAGLGYADRAAGLHGYCRGLMLPLERKSVEPLAAHLDPLRTRAQHQALHHFVAKSDWSDAA VLERVRQYVSSRMELKGEVYWIVDHTGFRKKGKHSVGVARQYCGEIGKQDNCQVAVSVSLATPAASVPMAFGLYLPEAWA ADAAQREKAGVPKEITFATKPEIALAQIHAAHAAGVVRGTVLADAAYGSNTAWRDALAALELTYAVGIVSSVKVWPPGQT PEAPAPWKGQGRPAIRHRRTADRQPQSVEALARSLPRRACNDPLIFCSSATFPEGDTDERNDGRRDQALDRPSQVGAGP
Sequences:
>Translated_319_residues MNMAAVSHEARFSAYLDELSAGLGYADRAAGLHGYCRGLMLPLERKSVEPLAAHLDPLRTRAQHQALHHFVAKSDWSDAA VLERVRQYVSSRMELKGEVYWIVDHTGFRKKGKHSVGVARQYCGEIGKQDNCQVAVSVSLATPAASVPMAFGLYLPEAWA ADAAQREKAGVPKEITFATKPEIALAQIHAAHAAGVVRGTVLADAAYGSNTAWRDALAALELTYAVGIVSSVKVWPPGQT PEAPAPWKGQGRPAIRHRRTADRQPQSVEALARSLPRRACNDPLIFCSSATFPEGDTDERNDGRRDQALDRPSQVGAGP >Mature_319_residues MNMAAVSHEARFSAYLDELSAGLGYADRAAGLHGYCRGLMLPLERKSVEPLAAHLDPLRTRAQHQALHHFVAKSDWSDAA VLERVRQYVSSRMELKGEVYWIVDHTGFRKKGKHSVGVARQYCGEIGKQDNCQVAVSVSLATPAASVPMAFGLYLPEAWA ADAAQREKAGVPKEITFATKPEIALAQIHAAHAAGVVRGTVLADAAYGSNTAWRDALAALELTYAVGIVSSVKVWPPGQT PEAPAPWKGQGRPAIRHRRTADRQPQSVEALARSLPRRACNDPLIFCSSATFPEGDTDERNDGRRDQALDRPSQVGAGP
Specific function: Involved in the transposition of the insertion sequence [H]
COG id: COG5659
COG function: function code L; FOG: Transposase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012337 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34505; Mature: 34505
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNMAAVSHEARFSAYLDELSAGLGYADRAAGLHGYCRGLMLPLERKSVEPLAAHLDPLRT CCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHH RAQHQALHHFVAKSDWSDAAVLERVRQYVSSRMELKGEVYWIVDHTGFRKKGKHSVGVAR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH QYCGEIGKQDNCQVAVSVSLATPAASVPMAFGLYLPEAWAADAAQREKAGVPKEITFATK HHHHHHCCCCCCEEEEEEEECCCCHHCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCC PEIALAQIHAAHAAGVVRGTVLADAAYGSNTAWRDALAALELTYAVGIVSSVKVWPPGQT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCC PEAPAPWKGQGRPAIRHRRTADRQPQSVEALARSLPRRACNDPLIFCSSATFPEGDTDER CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC NDGRRDQALDRPSQVGAGP CCCCHHHHHCCCCCCCCCC >Mature Secondary Structure MNMAAVSHEARFSAYLDELSAGLGYADRAAGLHGYCRGLMLPLERKSVEPLAAHLDPLRT CCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCHHHCCCCHHHHHHHHHHH RAQHQALHHFVAKSDWSDAAVLERVRQYVSSRMELKGEVYWIVDHTGFRKKGKHSVGVAR HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHH QYCGEIGKQDNCQVAVSVSLATPAASVPMAFGLYLPEAWAADAAQREKAGVPKEITFATK HHHHHHCCCCCCEEEEEEEECCCCHHCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCC PEIALAQIHAAHAAGVVRGTVLADAAYGSNTAWRDALAALELTYAVGIVSSVKVWPPGQT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCEECCCCCC PEAPAPWKGQGRPAIRHRRTADRQPQSVEALARSLPRRACNDPLIFCSSATFPEGDTDER CCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC NDGRRDQALDRPSQVGAGP CCCCHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1662761 [H]