| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
Click here to switch to the map view.
The map label for this gene is 84624025
Identifier: 84624025
GI number: 84624025
Start: 2628621
End: 2629652
Strand: Direct
Name: 84624025
Synonym: XOO_2368
Alternate gene names: NA
Gene position: 2628621-2629652 (Clockwise)
Preceding gene: 84624024
Following gene: 84624031
Centisome position: 53.21
GC content: 62.89
Gene sequence:
>1032_bases ATGATGAAGAGAGACGGACGCTTGGTATCGCGGGCGGCGCTGGAAGAAATGTGCCTGATGGCGTTGCAACGGATGGGCGA AGGCGAATCGCCGGCCGAAGTGGCCTCGTCGTTCGGGTTGCATCGCGGCTGGGCCTACAAAGTGCTGGCGCGAGCACAGG AGGGCGGCGCTGGCGCATTGATGACGCGTAAGGGCAGCGGTCGCCCGCGGACGTTGACGCCGGCGCAGGAGCGCCAGGTG TTCGGCTGGGTCAATGGTAAGAACCCTCGCCAGCATGGCTTCGACTTCGGTCTGTGGACGCGGCAGGTCGTGCGTGAACT GATCGAGAAGAAATGTGCCGCACGGTTGAGTCTGGCCAGCGTCGGGACGTTGCTGGCGCGGCTGGGGCTGAGCCCACAGA AGCCGCTGCAACACGCCTATCAGCGCGATCCACTGGCGGTAGCACAGTGGGAAAAGCAGACTTACCCGGCGATCGTGACG CACGCCAAGCAGGAAAAGGCCGAGATTGACTTCTGGGACGAGTCTGGCTTCCGTGCCGATGCGGTGCAAGGACGGACGTG GGCCTTCAAGGGCGTCACGCCGGTTGTCGCGGTGCCGGGGCAGCGCCAGAGCATCAGTGCGGCCTCGGCGGTGAACAGCA AGGGCGGGTTCTGGTTCGCCGTGTACAGCGGCGGCTTGAACGGTGAATTGTTCGTGGACCTGCTCAAGCGAATGATGAAA GGCCGTCGCCGTCCAATCCATCTGGTGCTTGATGGTTTGCCTGCTCACAAGACCCGTGGCGTGCGCGATGACGTGGACAG CCTGAAGGGCAGGCTGACGCTGCATTTCCTGCCGGGTGACGCGCCGGACTTGAATCCCGACGAGTTGGTGTGGAGCTACA CCAAGCGCACGGGCGTGGCGCGCAGCCCGCTGCGCAGTGGCGAGAAGCTGGCCGATCGGGTGCATGATCAGTTGTCCGAC ATTGCAGCTCGACCAGAATTGGTGCGCTCGTTCTTCAGGCATTCAAGTGTCGCCTATATTTCTGACTTATGA
Upstream 100 bases:
>100_bases GTTCTTTCAGCCAGGACCCCATGGCGGCCTGGCATTGGGCCGGTTTAGCGATAAGCGCGGAGGTGCTGCAGCTGAAGGTC AGGGCTAATCAGGACCATCC
Downstream 100 bases:
>100_bases GTAATCCTATAGATTCGCTTTCGAGCCAATTCCCCCATCCAACTGCACTTGCGCCTTGCCCACCGGGTTACGCGGGTCGC TGCCGCCGCTGAGCACGTTG
Product: ISXoo2 transposase
Products: NA
Alternate protein names: Transposase And Inactivated Derivatives; ISXo7 Transposase; Helix-Turn-Helix Type; Integrase Catalytic Region; ISXoo2 Transposase; Transposase And Inactivated Derivatives-Like Protein; Transposase IS; Transposase Of IS; Cation Diffusion Facilitator Family Transporter; Isxo7 Transposase; Transposase Fragmentary Gene
Number of amino acids: Translated: 343; Mature: 343
Protein sequence:
>343_residues MMKRDGRLVSRAALEEMCLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGALMTRKGSGRPRTLTPAQERQV FGWVNGKNPRQHGFDFGLWTRQVVRELIEKKCAARLSLASVGTLLARLGLSPQKPLQHAYQRDPLAVAQWEKQTYPAIVT HAKQEKAEIDFWDESGFRADAVQGRTWAFKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELFVDLLKRMMK GRRRPIHLVLDGLPAHKTRGVRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVARSPLRSGEKLADRVHDQLSD IAARPELVRSFFRHSSVAYISDL
Sequences:
>Translated_343_residues MMKRDGRLVSRAALEEMCLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGALMTRKGSGRPRTLTPAQERQV FGWVNGKNPRQHGFDFGLWTRQVVRELIEKKCAARLSLASVGTLLARLGLSPQKPLQHAYQRDPLAVAQWEKQTYPAIVT HAKQEKAEIDFWDESGFRADAVQGRTWAFKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELFVDLLKRMMK GRRRPIHLVLDGLPAHKTRGVRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVARSPLRSGEKLADRVHDQLSD IAARPELVRSFFRHSSVAYISDL >Mature_343_residues MMKRDGRLVSRAALEEMCLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGALMTRKGSGRPRTLTPAQERQV FGWVNGKNPRQHGFDFGLWTRQVVRELIEKKCAARLSLASVGTLLARLGLSPQKPLQHAYQRDPLAVAQWEKQTYPAIVT HAKQEKAEIDFWDESGFRADAVQGRTWAFKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELFVDLLKRMMK GRRRPIHLVLDGLPAHKTRGVRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVARSPLRSGEKLADRVHDQLSD IAARPELVRSFFRHSSVAYISDL
Specific function: Unknown
COG id: COG3335
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38035; Mature: 38035
Theoretical pI: Translated: 10.68; Mature: 10.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKRDGRLVSRAALEEMCLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGAL CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEE MTRKGSGRPRTLTPAQERQVFGWVNGKNPRQHGFDFGLWTRQVVRELIEKKCAARLSLAS EEECCCCCCCCCCCHHHCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VGTLLARLGLSPQKPLQHAYQRDPLAVAQWEKQTYPAIVTHAKQEKAEIDFWDESGFRAD HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHCHHHCCCCEEECCCCCCCC AVQGRTWAFKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELFVDLLKRMMK CCCCCEEEECCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH GRRRPIHLVLDGLPAHKTRGVRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVA CCCCCEEEEEECCCCHHCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCH RSPLRSGEKLADRVHDQLSDIAARPELVRSFFRHSSVAYISDL HCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure MMKRDGRLVSRAALEEMCLMALQRMGEGESPAEVASSFGLHRGWAYKVLARAQEGGAGAL CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCEE MTRKGSGRPRTLTPAQERQVFGWVNGKNPRQHGFDFGLWTRQVVRELIEKKCAARLSLAS EEECCCCCCCCCCCHHHCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VGTLLARLGLSPQKPLQHAYQRDPLAVAQWEKQTYPAIVTHAKQEKAEIDFWDESGFRAD HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHCCCCHHHHHCHHHCCCCEEECCCCCCCC AVQGRTWAFKGVTPVVAVPGQRQSISAASAVNSKGGFWFAVYSGGLNGELFVDLLKRMMK CCCCCEEEECCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH GRRRPIHLVLDGLPAHKTRGVRDDVDSLKGRLTLHFLPGDAPDLNPDELVWSYTKRTGVA CCCCCEEEEEECCCCHHCCCCHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCH RSPLRSGEKLADRVHDQLSDIAARPELVRSFFRHSSVAYISDL HCHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA