Click here to switch to the map view.

The map label for this gene is int [H]

Identifier: 84624005

GI number: 84624005

Start: 2609609

End: 2609971

Strand: Direct

Name: int [H]

Synonym: XOO_2348

Alternate gene names: 84624005

Gene position: 2609609-2609971 (Clockwise)

Preceding gene: 84624001

Following gene: 84624012

Centisome position: 52.82

GC content: 58.4

Gene sequence:

>363_bases
ATGAATTACACCCCGGGAGATGGTGGCGTAACAGTGCGGTCGGGGCCGAAGCTGTTGGATCAGGTGCGCAACCGCCTGCG
GGTACTGCACTACAGCCTGTGCACCGAGCAGGCCTACCTGAGCTGGATACGGCGCTTCATCCTGGCCAGCGGCAAGCATT
ATTTGGTGCAGCTGGGCCAAATGGAGGTCGAAGCGTTTTTCACCCGCTTGGCGATCCAGGCAAAGGCGTCTGCAGGCACA
CAGAACCAGGCGTTGGCGGCGCTGTTGTTTCTCTCCAGCGACGTATTGCGTCTCGATCGGCATCACGTGTCCGACGAAAT
CTCTCGTGTTCAAGATCTTGAGTCGTGGCGTCACAGTGCATAA

Upstream 100 bases:

>100_bases
GGGAATAAGCTCTTCCCAATGAATATCAAGTGCTTACCTGATAGCTGGGGCCACGTCTGACGTCGATGCTGATGGTGTTA
CTCAACGGTTGACCAGGCGT

Downstream 100 bases:

>100_bases
CCGTGCAGTTACGACGCCCAACGCCAGAAACGAAAAAACCGCGCAATGCGCGGTTTTTTCGTCACACTTTTGCCCACCCA
TCAAGGACGGCGCGCCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: E2 protein [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MNYTPGDGGVTVRSGPKLLDQVRNRLRVLHYSLCTEQAYLSWIRRFILASGKHYLVQLGQMEVEAFFTRLAIQAKASAGT
QNQALAALLFLSSDVLRLDRHHVSDEISRVQDLESWRHSA

Sequences:

>Translated_120_residues
MNYTPGDGGVTVRSGPKLLDQVRNRLRVLHYSLCTEQAYLSWIRRFILASGKHYLVQLGQMEVEAFFTRLAIQAKASAGT
QNQALAALLFLSSDVLRLDRHHVSDEISRVQDLESWRHSA
>Mature_120_residues
MNYTPGDGGVTVRSGPKLLDQVRNRLRVLHYSLCTEQAYLSWIRRFILASGKHYLVQLGQMEVEAFFTRLAIQAKASAGT
QNQALAALLFLSSDVLRLDRHHVSDEISRVQDLESWRHSA

Specific function: Putative integrase believed to be involved in the insertion of antibiotic resistance genes into plasmids and transposons [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR011946
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 13597; Mature: 13597

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYTPGDGGVTVRSGPKLLDQVRNRLRVLHYSLCTEQAYLSWIRRFILASGKHYLVQLGQ
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MEVEAFFTRLAIQAKASAGTQNQALAALLFLSSDVLRLDRHHVSDEISRVQDLESWRHSA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNYTPGDGGVTVRSGPKLLDQVRNRLRVLHYSLCTEQAYLSWIRRFILASGKHYLVQLGQ
CCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MEVEAFFTRLAIQAKASAGTQNQALAALLFLSSDVLRLDRHHVSDEISRVQDLESWRHSA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2821509; 2823258; 3054482; 8195081; 2188588 [H]