| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is sbcB [H]
Identifier: 84623964
GI number: 84623964
Start: 2568451
End: 2569896
Strand: Direct
Name: sbcB [H]
Synonym: XOO_2307
Alternate gene names: 84623964
Gene position: 2568451-2569896 (Clockwise)
Preceding gene: 84623963
Following gene: 84623965
Centisome position: 51.99
GC content: 63.9
Gene sequence:
>1446_bases ATGCCTGACAGCTTTCTCTTCTACGACCTGGAAACCTTCGGCCAGGACCCGCGCCGCACCCGCATTGCACAGTTCGCAGC GGTGCGGACCGACGCGCAACTGCGCGTGATCGAAGAGCCGATCAGCTTCTTTGTGCAGCCGGCCGACGATCTGCTGCCCT CGCCCTACGCCACCATGGTGACCGCTATCACGCCGCAGCACGCGCTGCGCGAAGGCGTCACCGAGGCCGAGGCGTTCGCG CGCATCGCCGAACAGATGAGCCGGCCGCAGACCTGTACGCTGGGCTACAACTCGATTCGCTTCGACGACGAGTTCGTGCG CTGCGGCCTGTTTCGCAATTTTTACGACCCCTACGAGCGCGAGTGGCGCGGCGGAAACTCGCGTTGGGATCTGCTGGATG TGTTGCGGATGGTGCATGCGCTGCGTCCGGACGGCATCGTCTGGCCGCAACGCGAAGATGGCGCCACCTCGTTCAAGCTG GAACACCTGGCCAGTGCCAACGATGTGCGCGAAGGCGATGCGCACGAAGCGCTGTCGGACGTGTACGCCACCATCGGCAT GGCGCGCAAGTTTCAGCAGCATCAGCCAAAACTGTGGGACTACGCGCTGCGTCTGCGCGACAAGCGCTTTGCCGCCACCT TGCTGGACGTCATCGCCATGCAGCCGGTGCTGCATATTTCGCAGCGCTACCCCGCCTCGCGTCTATGCGCGGCGGCGGTG CTGCCGCTGACACGCCATCCGCGCATCGACAGCCGCGTGATCGTGTTTGATCTGGAAGGCGACCCGGACGTGCTGTTGCG GCTAAGCCCCGACGAAATTGCCGACCGCCTGTATATTCGCGCCGCAGATCTGCCGGAAGGCGAGCGGCGTATTCCACTGA AAGAAGTGCATCTGAACAAGTCGCCCGCGCTGGTGGCCTGGCAGCATCTACGCGCTGCAGATTTTGAGCGCCTGGGCGTG GATCAGGATGCAGTATTGGCCAAGGCGGCACGCATGCGCGAATTGGGCCCCGAACTTGCCGAAAAGGTACGCCAGGTTTA TGGCAGCGAGCGCGCACCTGCGGCAGCGACCAACGATGCTGACGCTTCGCTCTACGATGGCTTTCTGGCCGAAGGCGACA AGCGTCTGCTGGCGCAAGTCCGCACCAGCGCACCGGCCGAACTGTGCGCGTTGGAGTCACGCTTTCGCGACCCGCGCCTG ATCGAACTACTGTTCCGCTACCGCGCGCGCAACTGGCCGCAGACACTGTCGTTCGACGAACAGGAGCGCTGGAACGCGTA TCGCCGCCAGCGCCTGCTCGAAGATCGCGGCCTGGGCGAAGTGACCCTGGAACAGTACAACGCGCAGATCGTGGATTTAC GGCGTGCTCACCCCGACGATGCTACCAAGCAAGCCCTCCTCGACCAGCTCGCCGCCTGGGGTTTGGACCTCCAACGCACG CTATGA
Upstream 100 bases:
>100_bases CGCAACGCCACGCCTCAGCGTGCCGGCGCTGCGATGAGTGATACTAGGCGGCAACGGCAGCGCATACGCCGCGCGCTGCG CATCTGGATGTCGTACCTGC
Downstream 100 bases:
>100_bases CCAGCTACTTTTCCGACGCCAGTTTCACGTTCCTGCGCGCCCTGGCCCGGCACAACGACAAAACCTGGTTCAACGACCAT CGGCATCAGTACGAGGCGCA
Product: exonuclease I
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 481; Mature: 480
Protein sequence:
>481_residues MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAITPQHALREGVTEAEAFA RIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKL EHLASANDVREGDAHEALSDVYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSPALVAWQHLRAADFERLGV DQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRL IELLFRYRARNWPQTLSFDEQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWGLDLQRT L
Sequences:
>Translated_481_residues MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAITPQHALREGVTEAEAFA RIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKL EHLASANDVREGDAHEALSDVYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSPALVAWQHLRAADFERLGV DQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRL IELLFRYRARNWPQTLSFDEQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWGLDLQRT L >Mature_480_residues PDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAITPQHALREGVTEAEAFAR IAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLE HLASANDVREGDAHEALSDVYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVL PLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSPALVAWQHLRAADFERLGVD QDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLI ELLFRYRARNWPQTLSFDEQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWGLDLQRTL
Specific function: Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=467, Percent_Identity=43.8972162740899, Blast_Score=383, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 55074; Mature: 54943
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV CCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHH TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER HHCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCHHHH EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK CCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHHHEEEECCCCCCCCCCCHHHHCCCC SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCH QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWGLDLQRT HHHHHHHHHHHHHHHCCCCCCHHHHHCCHHEEHHHCCCCHHHHHHHHHHHHHHCCCHHHC L C >Mature Secondary Structure PDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV CCCEEEEEHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHH TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER HHCCHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHCCHHHH EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD HHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHH VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK CCCCCCCCCCCEEEEEEECCCCCEEEEECHHHHHHHHEEEECCCCCCCCCCCHHHHCCCC SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCC DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE CHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCH QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWGLDLQRT HHHHHHHHHHHHHHHCCCCCCHHHHHCCHHEEHHHCCCCHHHHHHHHHHHHHHCCCHHHC L C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3539937; 9097040; 9278503; 1329027 [H]