| Definition | Xanthomonas oryzae pv. oryzae MAFF 311018, complete genome. |
|---|---|
| Accession | NC_007705 |
| Length | 4,940,217 |
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The map label for this gene is capD [H]
Identifier: 84623712
GI number: 84623712
Start: 2273075
End: 2274982
Strand: Direct
Name: capD [H]
Synonym: XOO_2055
Alternate gene names: 84623712
Gene position: 2273075-2274982 (Clockwise)
Preceding gene: 84623711
Following gene: 84623713
Centisome position: 46.01
GC content: 62.47
Gene sequence:
>1908_bases ATGATTTCCTCGCGTGACCGTTTGACCAAGGCCCTGCCGCAGATAGCGGTCGTGGTACACGACCTATTGATGGTGTGGGT GTGCTGGCAGCTACTGCACGCCGGCCGCTATTCCATGTTGCGCCAGGCGCCGGATCTGCCGCTGTGGGATTGGCGCACCG GGGTGGTGTTGGTGGCGCAGGGTCTGGTGTTCTGGAAGATGGGGTTGTACCGCGGACTGTGGCGCTTCGCCTCGGTGCCG GACCTATGGAACATCTTCAAGTCGAGTTTCCTCGGCCTGGTCGCGATCGTGCTCGCGTTGTCGTACGACCGCCTGGATCG CGTGCCGTTGTCGGTGCTGGTGGTCTATCCGTTCGCGTTGTCGGCCATGCTGGGTACGCCGCGTTTGCTGTATCGCGCTT GGAAGGACTACCAGATCACGCATTCCGGTGATGCCGGGCAGCGCGTGCTGATCCTTGGAGCAGGGCGTGCTGCCGAAGGT TTGGTACGCGATCTGCGCCGTACTGGCGCGTTTGTGCCGATTGGTTATCTGGACGACGCCAACAACCTGCACGGCGCCAA GATCCAGGGTCTCAATGTGCTGGGCAATCTGGATCAAGCTGCTGCGATTGCCAAAGAAACTGCCGCCAAGCTGCTGGTCA TCGCGATCCCATCGCTGGATGCCTCCGGCATGCAGCGCGTTGTGGCGATCTGCGAAAGCACCGGCCTGCCGTTCCGCATG GTGCCCAAGCTGATCAACGTCCTGGAAGGGCGCTCGTTGCCGGGCGAGTTGAAGGAGGTCGCGATCGAGGATTTGCTCAA CCGCAAGCCGGTCACGCCCGACTGGCGCCTGATCCGCGACTGGCTGACCAACAAGACTGTGATGGTGACCGGCGCCGGCG GTTCGATCGGCTCGGAAGTCTGCCGCCAGTGCGCCCGTCACGGAGCGCGCCGGATCGTACTGTTGGAGATCGACGAGTTG GCGTTGCTGACCATCGACTCGGATCTGCGTCGGCTATTCCCGGATATCGAAGTGGTGCGCGTACTCGGCGATTGCGGCGA CCCGGCAGTGGTTGCGCATGCGCTGAACACCGCGACCCCGGATGCGGTGTTTCACGCTGCCGCTTACAAGCAGGTGCCGC TGCTGGAAGAGCAATTGCGCGAGGCGGTGCGCAATAACGTGCTGGCAACCGAGAACGTGGCGCGCGCCTGCCAGCGTGCA CGCATCGAAACCTTCGTCTTCATTTCTACCGATAAGGCGGTCGAGCCGGTCAACGTGCTGGGCGCAAGCAAGCGCTATGC AGAAATGATCTGCCAGAGCCTTGACGCGCGCGATGCGCCGACGCGCTTCATCACCGTGCGCTTCGGCAACGTGCTGGATT CGGCAGGCAGCGTGGTGCCATTGTTCCGCGAACAGATCCGTCAGGGCGGCCCGGTCACGGTGACGCATCCGGACGTGACG CGTTACTTCATGACCATCCCCGAAGCCTGCCAGTTGGTGATCCAGGCAGCGGCGTCTGCATCGCATGGTGCGATCTATAC GCTGGACATGGGGGAGCCTGTGCCGATTCGCCTGCTGGCCGAGCAGATGATCCGTCTGGCCGGCAAGCAGCCGGGCAAGG ACGTGGCGATTCTCTACACCGGCTTGCGTCCGGGCGAGAAGCTGCACGAGACGCTGTTCTATTCCGACGAAGACTATCGC CCCACCGCGCACTCCAAAATTCTCGAAGCCGGTGTGCGCGAGTTCTCGCATGAGCAAGTGCTGCAGCTGGTGACGCGCTT GCGCGAGGCCGTTAACCGCTATGACATCAACGCGATGGAGACGGTGCTGGGCAGTCTGATGCCGGATTTCGCGGCTGCTC GACGGAAAGTCGACGCGCGATCTGATACGGTCGTTCCATTCCCCGCACGTGAGGTCAGAAGACTGTAA
Upstream 100 bases:
>100_bases TGGCAGCAGGTGTCCGGAGCTCTGGTCTGGGGCGTGGGCGCTACTGCAATCTGGCACTTTCTGCGCGATGGACTGCGCAA TTCCTGAGTAATGGATTTTT
Downstream 100 bases:
>100_bases TGAGCCAGCGTATTCGCAAGGCAGTATTTCCCGTCGCAGGTCTTGGAACCCGCTTTCTTCCGGCAACCAAGACGGTGCCG AAAGAAATGCTGCCAATCAT
Product: epimerase
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MISSRDRLTKALPQIAVVVHDLLMVWVCWQLLHAGRYSMLRQAPDLPLWDWRTGVVLVAQGLVFWKMGLYRGLWRFASVP DLWNIFKSSFLGLVAIVLALSYDRLDRVPLSVLVVYPFALSAMLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEG LVRDLRRTGAFVPIGYLDDANNLHGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRM VPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDEL ALLTIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALNTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRA RIETFVFISTDKAVEPVNVLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVT RYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYTGLRPGEKLHETLFYSDEDYR PTAHSKILEAGVREFSHEQVLQLVTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDARSDTVVPFPAREVRRL
Sequences:
>Translated_635_residues MISSRDRLTKALPQIAVVVHDLLMVWVCWQLLHAGRYSMLRQAPDLPLWDWRTGVVLVAQGLVFWKMGLYRGLWRFASVP DLWNIFKSSFLGLVAIVLALSYDRLDRVPLSVLVVYPFALSAMLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEG LVRDLRRTGAFVPIGYLDDANNLHGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRM VPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDEL ALLTIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALNTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRA RIETFVFISTDKAVEPVNVLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVT RYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYTGLRPGEKLHETLFYSDEDYR PTAHSKILEAGVREFSHEQVLQLVTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDARSDTVVPFPAREVRRL >Mature_635_residues MISSRDRLTKALPQIAVVVHDLLMVWVCWQLLHAGRYSMLRQAPDLPLWDWRTGVVLVAQGLVFWKMGLYRGLWRFASVP DLWNIFKSSFLGLVAIVLALSYDRLDRVPLSVLVVYPFALSAMLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEG LVRDLRRTGAFVPIGYLDDANNLHGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRM VPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEVCRQCARHGARRIVLLEIDEL ALLTIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALNTATPDAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRA RIETFVFISTDKAVEPVNVLGASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVT RYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYTGLRPGEKLHETLFYSDEDYR PTAHSKILEAGVREFSHEQVLQLVTRLREAVNRYDINAMETVLGSLMPDFAAARRKVDARSDTVVPFPAREVRRL
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 70292; Mature: 70292
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISSRDRLTKALPQIAVVVHDLLMVWVCWQLLHAGRYSMLRQAPDLPLWDWRTGVVLVAQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH GLVFWKMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYDRLDRVPLSVLVVYPFAL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SAMLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAFVPIGYLDDA HHHHCCHHHHHHHHCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCC NNLHGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRM CCCCCCEEECCHHHCCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCHHH VPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEV HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHH CRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALNTATP HHHHHHCCCCEEEEEEECCEEEEEECHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCH DAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVL HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH GASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVT CCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHCCCCEEEECCHHH RYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYT HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE GLRPGEKLHETLFYSDEDYRPTAHSKILEAGVREFSHEQVLQLVTRLREAVNRYDINAME CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHH TVLGSLMPDFAAARRKVDARSDTVVPFPAREVRRL HHHHHHCHHHHHHHHHCCCCCCCCCCCCHHHHHCC >Mature Secondary Structure MISSRDRLTKALPQIAVVVHDLLMVWVCWQLLHAGRYSMLRQAPDLPLWDWRTGVVLVAQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH GLVFWKMGLYRGLWRFASVPDLWNIFKSSFLGLVAIVLALSYDRLDRVPLSVLVVYPFAL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SAMLGTPRLLYRAWKDYQITHSGDAGQRVLILGAGRAAEGLVRDLRRTGAFVPIGYLDDA HHHHCCHHHHHHHHCCCEEEECCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCCC NNLHGAKIQGLNVLGNLDQAAAIAKETAAKLLVIAIPSLDASGMQRVVAICESTGLPFRM CCCCCCEEECCHHHCCCHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCHHH VPKLINVLEGRSLPGELKEVAIEDLLNRKPVTPDWRLIRDWLTNKTVMVTGAGGSIGSEV HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCCHHHHH CRQCARHGARRIVLLEIDELALLTIDSDLRRLFPDIEVVRVLGDCGDPAVVAHALNTATP HHHHHHCCCCEEEEEEECCEEEEEECHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCH DAVFHAAAYKQVPLLEEQLREAVRNNVLATENVARACQRARIETFVFISTDKAVEPVNVL HHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHH GASKRYAEMICQSLDARDAPTRFITVRFGNVLDSAGSVVPLFREQIRQGGPVTVTHPDVT CCCHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCCHHHHHHHHHCCCCEEEECCHHH RYFMTIPEACQLVIQAAASASHGAIYTLDMGEPVPIRLLAEQMIRLAGKQPGKDVAILYT HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE GLRPGEKLHETLFYSDEDYRPTAHSKILEAGVREFSHEQVLQLVTRLREAVNRYDINAME CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHH TVLGSLMPDFAAARRKVDARSDTVVPFPAREVRRL HHHHHHCHHHHHHHHHCCCCCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]