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The map label for this gene is araQ [H]

Identifier: 84623697

GI number: 84623697

Start: 2258034

End: 2258870

Strand: Direct

Name: araQ [H]

Synonym: XOO_2040

Alternate gene names: 84623697

Gene position: 2258034-2258870 (Clockwise)

Preceding gene: 84623696

Following gene: 84623698

Centisome position: 45.71

GC content: 61.17

Gene sequence:

>837_bases
ATGAGCCGTGATGTTGGCCAATCGCGCTGGAATGCCGTGCTTATCAACGGCGGCCTGCTGGTGGTGGCGGTGATCAGCCT
GGCGCCGTTGCTGTGGATGCTGTCGGTGTCGTTCATGCCCACCGGCGAGGCCAGCCGGTTTCCGCCACCGATGCTGCCAT
CGGCATTCACTCTGGCCAACTACCACGAGCTGTTTGCACGCACCGGCATGGCGCGCAACTTCGCCAACAGCCTGTTGGTC
TCCGGGCTGATCACGCTCGGGTCGTTGCTGGTCAACACCATGGCCGGTTATGCGTTCGCCAAGCTGCAGTTCGTCGGCCG
CGAGCGCATCTTCAAGATCCTGATGGCGGCATTGGTGATTCCGGCGCAGGTGGCGATGCTGCCGCTGTTCCTGCTGATGA
AGCAGTTGCACCTGGTCAACAACATCGGCGGGGTGGTTGTGCCGGCGTTGGCCACGGTGTTCGGCATCTTCCTGGTGCGT
CAGTACGCGCGCAGCATTCCCGATGAATTGATCGAAGCCGCGCGTGTCGATGGCGCCAGCGAGATGCGGATCTTTTTCCA
GATCGTGTTGCCGATGCTCAAGCCGGTGCTGGTGACCTTGACCATCTTCACCTTCATGGGCTCGTGGAACGATTTCATGT
GGCCGCTGATCGTGCTGACCGACCAGGAGCAATACACCTTGCCGGTGGCGCTGGCGGCGCTGTCGCGCGAGCACATCATG
GACGTGGAATTGATGATGGCCGGTGCCGTGGTGACGGTGATTCCGGTGCTGCTATTGTTCCTGGCGCTGCAGCGTTACTA
CATCCAAGGTCTTCTGCTGGGGAGTGTGAAGGGGTGA

Upstream 100 bases:

>100_bases
GGAACCTCGGCCGCGCGTCGGCGGTGGCGTTCCTGTTGTTCCTGATTATCCTGGCGGTGACAACCGTGATGCTGCGCTTT
GGCCGCAAGAAGGACCTGAT

Downstream 100 bases:

>100_bases
GGCACCTGTTCCTGCGACTGTTTGCCATGACCGCCATTGCCGCCGCGGGCGCGGCGCAGGCGCAGGAGCGCGTGCTCGAC
GGCTTCAACGACATCGGCGC

Product: ABC transporter sugar permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSRDVGQSRWNAVLINGGLLVVAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLLV
SGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARVDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Sequences:

>Translated_278_residues
MSRDVGQSRWNAVLINGGLLVVAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLLV
SGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVR
QYARSIPDELIEAARVDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
>Mature_277_residues
SRDVGQSRWNAVLINGGLLVVAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLANYHELFARTGMARNFANSLLVS
GLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVIPAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQ
YARSIPDELIEAARVDGASEMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIMD
VELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=234, Percent_Identity=30.7692307692308, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787571, Length=265, Percent_Identity=29.811320754717, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1790464, Length=254, Percent_Identity=26.3779527559055, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30584; Mature: 30453

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRDVGQSRWNAVLINGGLLVVAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLAN
CCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YHELFARTGMARNFANSLLVSGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARVDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRDVGQSRWNAVLINGGLLVVAVISLAPLLWMLSVSFMPTGEASRFPPPMLPSAFTLAN
CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
YHELFARTGMARNFANSLLVSGLITLGSLLVNTMAGYAFAKLQFVGRERIFKILMAALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PAQVAMLPLFLLMKQLHLVNNIGGVVVPALATVFGIFLVRQYARSIPDELIEAARVDGAS
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHH
EMRIFFQIVLPMLKPVLVTLTIFTFMGSWNDFMWPLIVLTDQEQYTLPVALAALSREHIM
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
DVELMMAGAVVTVIPVLLLFLALQRYYIQGLLLGSVKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]