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The map label for this gene is ycjN [C]

Identifier: 84623695

GI number: 84623695

Start: 2255786

End: 2257156

Strand: Direct

Name: ycjN [C]

Synonym: XOO_2038

Alternate gene names: 84623695

Gene position: 2255786-2257156 (Clockwise)

Preceding gene: 84623694

Following gene: 84623696

Centisome position: 45.66

GC content: 64.19

Gene sequence:

>1371_bases
GTGCGCCTTTTGAAACTGTTGATATTGGCCGCCGCCCTGTGCGCAGGTGTGGCGGGATGCGAACGCGCCGATCCGGGCAA
GACCACGGTGCGTTTCTGGGCGATGGGCAAGGAGGCCGAAGTGGTCGCCGAGCTGGTGGCCGACTTCGAAAAGCACAACC
CCACGATCCACGTGGATGTGCAGAACATCCCGATGACCGCGGCGCACGAAAAACTGCTCACCGCCTTCGCCGCCGATGGC
CTGCCGGATGTGTGCCAACTCGGTAACACCTGGTTGCCGGAGTTCGCGCTGCTGGACACGCTGGAGCCGATGCAGCCGTA
CGTGGCGCGCTCCAGGATCGTCGACCCAGCCGATTATTTCCCCGGCGTGTGGGACACCAATTTGGTCGATGGCACGTTGT
ACGGCGTGCCGTGGTATGTGGACACGCGCCTGCTGTTCTATCGCAAGGATCTGCTACGCGAGGCCGGCTACCGCGAAATG
CCCAAGACCTGGGCCGAGATGGAGCAGGTGATGGCGGCGATCAAGCGCAAGGTCGGCCCCGACCGCTTCGCCATCCTGAT
GCCGCTCAACGAATTCGAGCAGCAACTGTCGTTCGCGCTGCAGCAGGACGACCGCCTGCTGCGCGACCACGACAACTACG
GCAACTTCCGTGGTGCCGGCTTCCGCAAGGCGCTGGGCTTCTACGACAACATGTATCAAAAAGGCTGGGCACCGAAGGTC
TCCGAGACCCAGGTGTCCAACGTCTGGTACGAATTCTTCAACGGCTATTACGCGTTCTATCTGTCCGGGCCGTGGAACGT
GCGCGAATTCAAGCTGCGCCAGCCACAGGGCATGGAAGGCCAGTGGGGCACCGCGCCGTTGCCGGGCCCCAATGGCCTGG
GTGCCGGCATTGCCGGCGGCTCCAGCCTGGTGATCTTCAAGTCCTCGCAACACAAGCAGGCCAGCTGGAAGCTGATCGAA
TACCTGTCGCAGCCGCAGGTGCAGGCGCGTTTCCACGCCATCATCGGCGACCTGCCGCCGCGTCGCAGTCCCTGGAAGTT
GCCTTCGCTGGCCAACGACGAATTGGCGCATGCCTTCGGCGACCAGCTGGAGCGGGTCAAGGCCACGCCCAAGGTGCTGG
AGTGGGAGCGCATCGTGCAGGAAATGCGTCTGGTGACCGAGCGTGTGGTACGTGGTGGCCAATCGCACGAAGCCGCCGTG
CAGGAACTGGATAAACGCGTGGACGAGATCCTGGCCAAGCGCCGCTGGATCTTCGCGCAGGAGGGTGGGCATGTGGGCCC
GGCCGGTGAGACGGCTACGCAGGCTGTAACGCCGGCTGCTGCGGACACCACCGCGCCAGCTGCCGCAGCGCACCAGGGAG
TCGCACGATGA

Upstream 100 bases:

>100_bases
CGAGCAGAAGGCGCCGCGCGCGCTGGGCATGGCCGAGTCGCGTGCCGCCGCCGCCCAGGTCCAGCAAGACCCCACGCAAC
GCCAAAAACCCGAGTAATCC

Downstream 100 bases:

>100_bases
TGAAGCGTAATTCCGTTGCCGGCTGGGTGTTCGCCGCGCCGTCGATCCTGGTGCTGGGCATGTTCTTCGGCGTGCCGGTG
TTCGCCGCGCTGGTGCTCAG

Product: ABC transporter sugar binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MRLLKLLILAAALCAGVAGCERADPGKTTVRFWAMGKEAEVVAELVADFEKHNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSRIVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYREM
PKTWAEMEQVMAAIKRKVGPDRFAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQKGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPQGMEGQWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKQASWKLIE
YLSQPQVQARFHAIIGDLPPRRSPWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDKRVDEILAKRRWIFAQEGGHVGPAGETATQAVTPAAADTTAPAAAAHQGVAR

Sequences:

>Translated_456_residues
MRLLKLLILAAALCAGVAGCERADPGKTTVRFWAMGKEAEVVAELVADFEKHNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSRIVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYREM
PKTWAEMEQVMAAIKRKVGPDRFAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQKGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPQGMEGQWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKQASWKLIE
YLSQPQVQARFHAIIGDLPPRRSPWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDKRVDEILAKRRWIFAQEGGHVGPAGETATQAVTPAAADTTAPAAAAHQGVAR
>Mature_456_residues
MRLLKLLILAAALCAGVAGCERADPGKTTVRFWAMGKEAEVVAELVADFEKHNPTIHVDVQNIPMTAAHEKLLTAFAADG
LPDVCQLGNTWLPEFALLDTLEPMQPYVARSRIVDPADYFPGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYREM
PKTWAEMEQVMAAIKRKVGPDRFAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQKGWAPKV
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPQGMEGQWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKQASWKLIE
YLSQPQVQARFHAIIGDLPPRRSPWKLPSLANDELAHAFGDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAV
QELDKRVDEILAKRRWIFAQEGGHVGPAGETATQAVTPAAADTTAPAAAAHQGVAR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 51022; Mature: 51022

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLKLLILAAALCAGVAGCERADPGKTTVRFWAMGKEAEVVAELVADFEKHNPTIHVDV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE
QNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSRIVDPADYF
CCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHC
PGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYREMPKTWAEMEQVMAAIKRKVGP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
DRFAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQKGWAPKV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPQGMEGQWGTAPLPGPNGLGAGIAGG
CHHHHHHHHHHHHCCEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSLVIFKSSQHKQASWKLIEYLSQPQVQARFHAIIGDLPPRRSPWKLPSLANDELAHAFG
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
DQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAVQELDKRVDEILAKRRWIFAQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEC
EGGHVGPAGETATQAVTPAAADTTAPAAAAHQGVAR
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MRLLKLLILAAALCAGVAGCERADPGKTTVRFWAMGKEAEVVAELVADFEKHNPTIHVDV
CHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEE
QNIPMTAAHEKLLTAFAADGLPDVCQLGNTWLPEFALLDTLEPMQPYVARSRIVDPADYF
CCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHC
PGVWDTNLVDGTLYGVPWYVDTRLLFYRKDLLREAGYREMPKTWAEMEQVMAAIKRKVGP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
DRFAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQKGWAPKV
CCEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
SETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPQGMEGQWGTAPLPGPNGLGAGIAGG
CHHHHHHHHHHHHCCEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
SSLVIFKSSQHKQASWKLIEYLSQPQVQARFHAIIGDLPPRRSPWKLPSLANDELAHAFG
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
DQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHEAAVQELDKRVDEILAKRRWIFAQ
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEC
EGGHVGPAGETATQAVTPAAADTTAPAAAAHQGVAR
CCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA